Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20pratense_20[genbank_20GCA_5F900079335.1_202016-04-15] 39,051 sequences; 345,990,850 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq28107 152 6e-32 seq38608 118 1e-21 seq6 114 1e-20 seq2 100 3e-16 seq29563 87.8 2e-12 >seq28107 Length=123132 Score = 152 bits (168), Expect = 6e-32 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 160956 GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGT 161015 ||||||||||| || || ||||| ||||| | |||||| ||| | |||| || | ||| Sbjct 14820 GTTGCATATTCAGCTCCGGTTGCAGCTGCTATTGCAGTTTTCTTGATCTACCCAATAGGT 14879 Query 161016 CAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTT 161075 || || || || ||||||||||| || || ||||||||||| |||||||| ||| || Sbjct 14880 CAGGGAAGCTTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATT 14939 Query 161076 GTCTTCCAGGCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGT 161135 || || ||||| || || || || || ||||| || || ||||||| ||||| |||||| Sbjct 14940 GTATTTCAGGCTGAGCATAATATTCTTATGCATCCGTTTTACATGTTAGGTGTAGCTGGT 14999 Query 161136 GTCTTCGGTGGTTCTCT 161152 || ||||| || || || Sbjct 15000 GTATTCGGCGGCTCACT 15016 >seq38608 Length=401930 Score = 118 bits (130), Expect = 1e-21 Identities = 137/185 (74%), Gaps = 0/185 (0%) Strand=Plus/Minus Query 164719 ATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAATTTG 164778 || ||||||| ||||| || || ||||| || || | ||||| || ||||||||||||| Sbjct 348922 ATATTCGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAATTTG 348863 Query 164779 AGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAG 164838 |||| ||||| || || || || ||| | || ||||| | ||||| |||||||| | Sbjct 348862 AGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCTTGGATGGCGGCTC 348803 Query 164839 TAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCCGAGAGGTAACGCAC 164898 ||| ||||| || ||| || |||| || ||||| ||||| || | || ||||| | Sbjct 348802 AAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACCACGTGGAAACGCTC 348743 Query 164899 TCTAA 164903 | ||| Sbjct 348742 TTTAA 348738 >seq6 Length=22682783 Score = 114 bits (126), Expect = 1e-20 Identities = 166/231 (72%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 160630 TGATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCT 160688 |||||||||| || | ||| | ||||| |||| ||||||| | ||| ||||||| Sbjct 2047935 TGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTATCACTTTCATTGCTGCC 2047993 Query 160689 CCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAAC 160748 || || || || || ||| ||||| | ||| |||| || || | || |||||| Sbjct 2047994 CCTTTAGTAGATATTGATGGTT--CGTGAGTCTGTTTCTGGATCTCTACTTTACGGAAAC 2048051 Query 160749 AACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGGTCTTCACTTCTACCCC 160808 || || || | |||||| || | ||| |||| || || ||| | ||||| ||||| Sbjct 2048052 AATATAATTTTTGGTGCCATTATCCCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCA 2048111 Query 160809 ATTTGGGAAGCTGCATCTCTTGATGAATGGCTCTACAATGGTGGTCCTTAC 160859 || |||||||||||||| ||||||| | | | ||||| || ||||||||| Sbjct 2048112 ATATGGGAAGCTGCATCCGTTGATGAGTTGTTATACAACGGCGGTCCTTAC 2048162 Score = 100 bits (110), Expect = 3e-16 Identities = 173/248 (70%), Gaps = 15/248 (6%) Strand=Plus/Minus Query 160599 AATCGTCTTTACGTCGGTTGGTTCGGTGTGCTGA-------TGATCCCAACTCTGTTGGC 160651 ||||||| |||| | || ||||| | ||| ||| ||||||| || | ||| | Sbjct 2115462 AATCGTCGTTACATTGGATGGTTTGATGTTTTGAATTTTGATGATCCCTACCTTATTGAC 2115403 Query 160652 AGCAACCGTCTGC-TTTATTACTGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTA 160710 ||||| |||| ||||||| || ||| ||||||| || || || || || ||| Sbjct 2115402 CGCAACT-TCTGTATTTATTATCGCTTTCATTGCTGCCCCTTTAGTAGATATTGATGGTT 2115344 Query 160711 TCCGTGAACCCGTTGCTGGTTCACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTG 160770 ||||| | ||| |||| || || | || |||||||| || || | |||||| || Sbjct 2115343 --CGTGAGTCTGTTTCTGGATCTCTACTTTACGGAAACAATATAATTTTTGGTGCCATTA 2115286 Query 160771 TTCCTT----CTTCCAACGCAATTGGTCTTCACTTCTACCCCATTTGGGAAGCTGCATCT 160826 ||||| |||| || || ||| | ||||| ||||| || ||||||||||||||| Sbjct 2115285 TTCCTAGCTACTTCTGCGGCTATCGGTTTGCACTTTTACCCGATATGGGAAGCTGCATCT 2115226 Query 160827 CTTGATGA 160834 ||||||| Sbjct 2115225 GTTGATGA 2115218 >seq2 Length=32560536 Score = 100 bits (110), Expect = 3e-16 Identities = 115/155 (74%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 50156 TGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATCAATCATTT 50215 ||||| ||||||||||||||| | || | |||| |||| | ||||||||| || ||| Sbjct 25898739 TGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTAATGTTAATCAGGAAGATGGTTCTTTT 25898798 Query 50216 CTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCTCGTCCTACTTCG 50275 ||||||||||| || |||||| |||| || | || ||||| ||| ||||| || Sbjct 25898799 CTTGATGATGAACAGATTGAAGGAGGTTGGGTTCTTACTTGTGTTGCTTTCCCTACATCT 25898858 Query 50276 GACTGTACTATTGAAACAGGAAAAGAAGAAGAACT 50310 || ||||||||| || || ||||| ||||| Sbjct 25898859 GATGTTACTATTGAGACTCACAAGGAAGAGGAACT 25898893 >seq29563 Length=4854 Score = 87.8 bits (96), Expect = 2e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 161025 TTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAG 161084 || || ||||||||||| || || ||||| ||||| |||||||| ||| |||| || ||| Sbjct 4304 TTTTCAGATGGTATGCCTCTAGGAATCTCCGGTACTTTCAACTTTATGATTGTATTTCAG 4363 Query 161085 GCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGT 161135 | || || || || || ||||| || || |||||||| |||| ||| || Sbjct 4364 GTTGAGCATAATATTCTTATGCATCCATTTCACATGTTATGTGTCGCTAGT 4414 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559054971028400