Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1431 407 2e-111 seq6 311 1e-82 seq97 188 1e-45 seq660 143 4e-32 seq255 98.7 1e-18 seq1852 93.3 6e-17 seq1371 80.6 4e-13 seq894 73.4 6e-11 >seq1431 Length=89469 Score = 407 bits (450), Expect = 2e-111 Identities = 246/256 (96%), Gaps = 3/256 (1%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| | Sbjct 33386 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCT-GATGACTCGCGCTTACTAGGAATT-C 33443 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33444 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 33503 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 180 ||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||| Sbjct 33504 CCCGGGCCTGTCGGCCAAGGCTATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGG 33563 Query 181 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAG 240 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 33564 CCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAGCG 33623 Query 241 GCCAT-CTCCCTCGAA 255 ||||| |||||| || Sbjct 33624 GCCATAGTCCCTCTAA 33639 Score = 179 bits (198), Expect = 6e-43 Identities = 109/114 (96%), Gaps = 1/114 (1%) Strand=Plus/Plus Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29032 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 29091 Query 203 CAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||||||||||||||||||||||||||||||||| |||||| |||||| || Sbjct 29092 CAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAGCGGCCATAGTCCCTCTAA 29145 >seq6 Length=1263909 Score = 311 bits (344), Expect = 1e-82 Identities = 202/219 (92%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38 GACTCGCGCTTACTAGGAATTTCCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCA 97 ||||||| ||||||||||||||| |||||||||||||||||||||||| |||||| |||| Sbjct 297756 GACTCGCACTTACTAGGAATTTC-TCGTTGAAGACCAACAATTGCAATTATCTATTCCCA 297698 Query 98 TCACGATGAAATTTCAAAGATTACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAAT 157 ||||||||||||||||||||||||| || | |||||||||||| ||||||||||||||| Sbjct 297697 TCACGATGAAATTTCAAAGATTACCTGGGCTTGTCGGCCAAGGCTATAGACTCGTTGAAT 297638 Query 158 ACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 297637 ACATCAGTGTAGCACGCATGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 297578 Query 218 CTCAAACTTCCGTGGCCTAAAAGGCCAT-CTCCCTCGAA 255 ||||| |||||||||||||| |||||| |||||| || Sbjct 297577 CTCAAGCTTCCGTGGCCTAAGTGGCCATAGTCCCTCTAA 297539 >seq97 Length=567527 Score = 188 bits (208), Expect = 1e-45 Identities = 148/172 (86%), Gaps = 5/172 (3%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 ||||||||||||| || ||||||||||| |||| || || | |||| ||||| |||||| Sbjct 359901 GTACAAAGGGCAGAGATGTAGTCAACGCAAGCT-GACGATTTGCGCGTACTAAAAATTTC 359843 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGATTA 120 | ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| Sbjct 359842 TT-GTTGAAGACCAACAATTGCAATGATCTATATCCATCGCGATGAAATTTCAAAGATTA 359784 Query 121 CCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGC 172 || ||||||||| ||||||| |||||||| |||||| ||||||||| || Sbjct 359783 CCTGGACCTGTCAGCCAAGGCTATAGACTC-TTGAAT--TTCAGTGTAGTGC 359735 >seq660 Length=244916 Score = 143 bits (158), Expect = 4e-32 Identities = 93/102 (91%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 143 ATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCA 202 ||||||||||||||||||||||||| ||| |||||| || |||||||||||||||||||| Sbjct 33351 ATAGACTCGTTGAATACATCAGTGTTGCGTGCGTGCAGCTCAGAACATCTAAGGGCATCA 33292 Query 203 CAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCA 244 ||||| |||||||| ||||||||| |||||||||| ||||| Sbjct 33291 CAGACATGTTATTGTCTCAAACTTTCGTGGCCTAAGTGGCCA 33250 >seq255 Length=465567 Score = 98.7 bits (108), Expect = 1e-18 Identities = 64/69 (93%), Gaps = 1/69 (1%) Strand=Plus/Plus Query 188 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAAAGGCCAT-C 246 |||||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 377805 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCTAAGCGGCCATAG 377864 Query 247 TCCCTCGAA 255 |||||| || Sbjct 377865 TCCCTCTAA 377873 >seq1852 Length=45573 Score = 93.3 bits (102), Expect = 6e-17 Identities = 55/56 (98%), Gaps = 1/56 (2%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAA 56 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 45519 GTACAAAGGGCAGGGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAGGAA 45573 >seq1371 Length=98490 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/56 (93%), Gaps = 1/56 (2%) Strand=Plus/Minus Query 3 ACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATT 58 ||||| ||||| |||||||||||||||||| ||||||||||||||||||| ||||| Sbjct 8271 ACAAAAGGCAGAGACGTAGTCAACGCGAGC-TGATGACTCGCGCTTACTAAGAATT 8217 >seq894 Length=192835 Score = 73.4 bits (80), Expect = 6e-11 Identities = 40/40 (100%), Gaps = 0/40 (0%) Strand=Plus/Minus Query 189 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 228 |||||||||||||||||||||||||||||||||||||||| Sbjct 40175 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCC 40136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751800216160