Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq1431 129 3e-28 seq6 98.7 6e-19 >seq1431 Length=89469 Score = 129 bits (142), Expect = 3e-28 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||||||||||||||||| ||||||||| ||| ||||| || |||||| | Sbjct 29654 GAACCCAAAGACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGCAACATCCGC 29712 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 29713 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 29770 >seq6 Length=1263909 Score = 98.7 bits (108), Expect = 6e-19 Identities = 95/118 (81%), Gaps = 3/118 (3%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||||||||||||||||| |||||| | ||| ||||| || |||||| | Sbjct 297260 GAACCCAAAGACTTTGATTTCTCATAAGGT-TCTAGCGGAGTCCTAAAAGCAACATCCGC 297202 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 |||||| |||||||| ||||| |||| | |||| |||| |||||||||||||| || Sbjct 297201 TGATCCCCGGTCGGCATCGTTTATGGTTGA-ACTAGGACGATATCTGATCGTCTTTGA 297145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 278328423360