Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq1431 224 2e-56 seq51 163 5e-38 seq537 143 5e-32 seq825 104 4e-20 >seq1431 Length=89469 Score = 224 bits (248), Expect = 2e-56 Identities = 201/248 (81%), Gaps = 3/248 (1%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || |||||||||| ||||||||||| |||||||| |||| |||| | |||||||||||| Sbjct 30017 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 29958 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || |||| | | |||| | | | ||||| |||||| | ||| || |||||||| Sbjct 29957 GGGATAACACCACAGGAT-TCTGATCCTATTGTGTTGGCCTTCGGGATCGGAGTAATGAT 29899 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || |||||||||||||||||||||||||| Sbjct 29898 TAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTAT 29839 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAAA 310 ||||| ||| ||||||||||| || |||||||||||||||||||||| |||||||| Sbjct 29838 GAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAAA 29780 Query 311 GTTAGGGG 318 ||| |||| Sbjct 29779 GTTGGGGG 29772 >seq51 Length=733434 Score = 163 bits (180), Expect = 5e-38 Identities = 134/162 (83%), Gaps = 1/162 (1%) Strand=Plus/Minus Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||| |||||| | ||| || ||||||||||| ||||| ||||||||| | || Sbjct 571933 CTATTGTGTTGGCCTTCGGGATCGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGT 571874 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTT 276 ||| || |||||||||||||||||||||||||| ||||| ||| ||||||||||| || Sbjct 571873 ATTTCATAGTCAGAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATT 571814 Query 277 CACCAAGGATGTTTTCATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||||||||||||||||| ||||||||||| |||| Sbjct 571813 TGCCAAGGATGTTTTCATTAATCA-AGAACGAAAGTTGGGGG 571773 >seq537 Length=284342 Score = 143 bits (158), Expect = 5e-32 Identities = 169/230 (73%), Gaps = 18/230 (8%) Strand=Plus/Plus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCAT 130 || ||||||| || ||||||||||| |||||||| | || ||| | | |||||||||||| Sbjct 28040 CTATTACTTTAAAGAAATTAGAGTGCTCAAAGCAAGTCTATGCCCTGGATACATTAGCAT 28099 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 || ||| | | | || | | | ||||| |||||| ||||| Sbjct 28100 GGGGTAACACCACAAGAT-TCTGATCCTATTGTGTTGGC----------------ATGAT 28142 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGATTTAT 250 ||| ||||| ||||||||| | ||||| || | |||||||||||||||||||||||| Sbjct 28143 TAACAGGGACAGTCGGGGGCATTTGTATTACATAGCCAGAGGTGAAATTCTTGGATTTAT 28202 Query 251 TGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCA 300 ||||| ||| ||||||||||| || |||| ||| ||||||||| ||| Sbjct 28203 GAAAGACGAACAACTGCGAAAGCATTTGCCAATGATATTTTCATTATTCA 28252 >seq825 Length=207429 Score = 104 bits (114), Expect = 4e-20 Identities = 109/141 (77%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 118 AATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGA 177 |||| ||||| |||| |||| | | |||| | | | ||||| |||||| | |||| Sbjct 115253 AATATATTAGTATGGCATAACACTACAGGAT-TCTGATCCTATTGTGTTGGCCTTCAGGA 115311 Query 178 CCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAA 237 || ||||||||||||||||| | |||||||| | ||||| || |||| |||||||| Sbjct 115312 TCGGAGTAATGATTAATAGGGACAATCGGGGGTATTCGTATTTCATAGTCAAAGGTGAAA 115371 Query 238 TTCTTGGATTTATTGAAGACT 258 |||||||||||| |||| ||| Sbjct 115372 TTCTTGGATTTA-TGAACACT 115391 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 914949015552