Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq1431 237 7e-60 seq1852 228 3e-57 seq1357 168 3e-39 seq886 113 2e-22 seq255 113 2e-22 seq56 86.0 3e-14 seq249 80.6 1e-12 >seq1431 Length=89469 Score = 237 bits (262), Expect = 7e-60 Identities = 226/283 (80%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| |||| | ||||||| ||| | | Sbjct 47123 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTA 47064 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACC-CGTGAGGGT-GCACCATCG 520 ||||||| | || || ||| ||| || ||||| || | || |||| ||||| || Sbjct 47063 AACCCGTAAGGCGCAAGGAAGCTGATTGG---TGGGATCCTCTTGTGGGTTGCACCGCCG 47007 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| |||||| | || || || || |||| |||||||| |||| ||||||||||||| Sbjct 47006 ACCGACCCTGATCTTTTGTGAAGGGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAGA 46947 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 |||||||||||||| || ||| ||||||||||||||||||||||||||| |||||| Sbjct 46946 TGGTGAACTATGCCGGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCGGCAGCGA 46887 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 46886 TACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 46844 Score = 172 bits (190), Expect = 2e-40 Identities = 137/165 (83%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 81564 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 81505 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||||||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 81504 TAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 81445 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 81444 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 81400 Score = 158 bits (174), Expect = 5e-36 Identities = 134/165 (81%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| || |||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 27549 TCGGCGTGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 27490 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||||| | || ||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 27489 TAAATATTGTCGAGCGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 27430 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 27429 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 27385 Score = 141 bits (156), Expect = 4e-31 Identities = 153/197 (78%), Gaps = 7/197 (4%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||||| ||| | ||||||| ||| | | Sbjct 27162 CGACCCGTCTTGAAACACGGACCAAGGAGTCTGACAGGTGTGCGAGTCAACGGGCGAGTA 27103 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACC-CGTGAGGGT-GCACCATCG 520 ||||||| | || || ||| ||| || ||||| || | || |||| ||||| || Sbjct 27102 AACCCGTAAGGCGCAAGGAAGCTGATTGG---TGGGATCCTCTTGTGGGTTGCACCGCCG 27046 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| |||||| | || || || || |||| |||||||| |||| ||||||||||||| Sbjct 27045 ACCGACCCTGATCTTTTGTGAAGGGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAGA 26986 Query 581 TGGTGAACTATGCCTGA 597 ||||||||||||||||| Sbjct 26985 TGGTGAACTATGCCTGA 26969 Score = 111 bits (122), Expect = 7e-22 Identities = 81/94 (86%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 67380 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 67321 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTA 128 ||||||||||| |||||||||||||| ||||||| Sbjct 67320 TAAATATTGGCGAGAGACCGATAGCGAACAAGTA 67287 >seq1852 Length=45573 Score = 228 bits (252), Expect = 3e-57 Identities = 224/283 (79%), Gaps = 7/283 (2%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-A 463 || ||||||||| ||||||||||||||||| | |||| | ||||||| ||| | | Sbjct 44133 CGACCCGTCTTGAAACACGGACCAAGGAGTATGACATGTGTGCGAGTCAACGGGCGAGTA 44074 Query 464 AACCCGTGCG-CGTAATGAAAGTGAACGGAGGTGGGAACC-CGTGAGGGT-GCACCATCG 520 ||||||| | || || ||| ||| || ||||| || | || |||| ||||| || Sbjct 44073 AACCCGTAAGGCGCAAGGAAGCTGATTGG---TGGGATCCTCTTGTGGGTTGCACCGCCG 44017 Query 521 ACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGA 580 ||||| |||||| | || || || || |||| |||||||| |||| ||||||||||||| Sbjct 44016 ACCGACCCTGATCTTTTGTGAAGGGTTCGAGTGAGAGCATACCTGTCGGGACCCGAAAGA 43957 Query 581 TGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGG 640 ||||||||||||||||| ||| ||||| ||||||||||||||||||||| ||||||| Sbjct 43956 TGGTGAACTATGCCTGAGCGGGGCGAAGCTAGAGGAAACTCTGGTGGAGGCCCGCAGCGA 43897 Query 641 TTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 | || ||||||||| | ||||| | |||||||||||||||| Sbjct 43896 TACTAACGTGCAAATTGTTCGTCTGACTTGGGTATAGGGGCGA 43854 Score = 167 bits (184), Expect = 1e-38 Identities = 136/165 (82%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| || || || Sbjct 44518 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCAGTCCAAGGC 44459 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||||||| |||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 44458 TAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 44399 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 44398 TGAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 44354 >seq1357 Length=101230 Score = 168 bits (186), Expect = 3e-39 Identities = 134/161 (83%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 39 CGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAA 98 ||||||| |||||||||||||||||| | || ||| |||||||| | || ||||||||| Sbjct 44266 CGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAAGCTAAA 44207 Query 99 TATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGA 158 ||||||| |||||||||||||| ||||||| | || ||||||||||||| |||||| | Sbjct 44206 TATTGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAA 44147 Query 159 AAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||||| ||| || | ||||||||| | | ||||||| Sbjct 44146 AAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAAGGAAGCG 44106 >seq886 Length=183529 Score = 113 bits (124), Expect = 2e-22 Identities = 100/125 (80%), Gaps = 0/125 (0%) Strand=Plus/Plus Query 47 GTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCC 106 ||| ||||| ||||||| | |||| || |||||||| | | ||| |||||||||||| Sbjct 95608 GTTATTTGGAAATGCAGTTTCAAATTGGCGGTAAATTCCATTCAAAACTAAATATTGGCG 95667 Query 107 AGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGT 166 ||| ||||||||| ||||||| | || |||| |||||||| |||||| ||||||||| Sbjct 95668 AGAACCCGATAGCGAACAAGTACCGCGAGAGAAATATGAAAAGGACTTTGAAAAGAGAGT 95727 Query 167 TAAAA 171 |||| Sbjct 95728 CAAAA 95732 >seq255 Length=465567 Score = 113 bits (124), Expect = 2e-22 Identities = 91/110 (83%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 90 AAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAG 149 || ||||||||||||| |||||||||||||| ||||||| | || ||||||||||||| Sbjct 378009 AACGCTAAATATTGGCGAGAGACCGATAGCGAACAAGTACCGCGAGGGAAAGATGAAAAG 378068 Query 150 CACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 |||||| ||||| ||| ||| || | ||||||||| | ||||||||| Sbjct 378069 GACTTTGAAAAGATAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 378118 >seq56 Length=960176 Score = 86.0 bits (94), Expect = 3e-14 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 26 GAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTC 85 || |||| ||| ||||||| |||||||| ||| ||||| | || || |||||||| | Sbjct 51291 GAGGCTCTGTCGGCGAGTCGGGTTGTTTGCGAACGCAGCCCCAATCAGGCGGTAAATTCC 51350 Query 86 TTCTAAAGCTAAATATTGGCCAGAGACCGATA 117 || || ||||||||||||| ||||||||||| Sbjct 51351 GTCCAAGGCTAAATATTGGCGAGAGACCGATA 51382 >seq249 Length=769229 Score = 80.6 bits (88), Expect = 1e-12 Identities = 109/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||| |||||||| | |||| | | ||| | ||||||||| || || | Sbjct 188983 TCGGCGAGTTGAGTTGTTCAGAAATGTAATTTTAATCAGACAGTAAATTTCGTCAAAGAC 189042 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 |||||| || | |||||| ||||||| |||| || | | ||||||||||| |||| Sbjct 189043 TAAATAATGACGAGAGACTGATAGCGAACAAATACTGCAAGGAAAAGATGAAAATGACTT 189102 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGT 186 || || || ||| ||| || | | ||||||| Sbjct 189103 TGAAATGAAAGTCAAAGAGTGCTTAAAATTGT 189134 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079411755200