Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq1943 210 6e-52 seq86 192 2e-46 seq1931 163 7e-38 seq24 105 2e-20 seq215 93.3 1e-16 >seq1943 Length=39883 Score = 210 bits (232), Expect = 6e-52 Identities = 289/402 (72%), Gaps = 3/402 (1%) Strand=Plus/Plus Query 11 GAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTA 70 ||||||||| ||||||||| ||||||||||||||||||| || ||| ||||||||||| Sbjct 27285 GAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTA 27344 Query 71 ATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAATCCC 130 |||||| | |||||||||||||| | ||| || | | |||| | || ||||||| Sbjct 27345 TCCGGAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCC 27404 Query 131 CGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAGGGGGGTG 190 ||||| |||| ||| | | | ||| | ||||||| | || || | | Sbjct 27405 AGGGCTCAACCCTGGACAGGTGGTGGAAACTACTAAGCTAGAGTACGGTAGGGGCAGAGG 27464 Query 191 GAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGCA 250 ||||| | ||| ||| ||||||||||||| || | ||||||||| |||||||| || Sbjct 27465 GAATTTCCGGTGGAGCGATGAAATGCGTAGAGATCGGAAGGAACACCCATGGCGAAAGCG 27524 Query 251 GCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGAT 310 | ||||| | |||||| || | |||||||| |||||||||| |||||||| Sbjct 27525 CTCTGCTGGGCCGATACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAG 27584 Query 311 ACCCTGGTAGTCCACGCCCTAAACGATATCAACT-AGTTGTTGGGGATTTACTTCCTTG- 368 |||| ||||||| ||| |||||||| ||| ||| | || | | | | || || Sbjct 27585 ACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAAGTGGCTGTGCGTATCCACCCGTGC 27644 Query 369 -GTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 | ||||||||||||| |||| ||||||||||| ||| Sbjct 27645 AATGCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTAC 27686 >seq86 Length=657349 Score = 192 bits (212), Expect = 2e-46 Identities = 246/334 (74%), Gaps = 10/334 (3%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||||| |||||||||||||||||||| ||| ||| ||||| | Sbjct 56187 GAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTG 56246 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGTGAAA- 126 || ||||||| ||||||||||||| | || ||||||| | | ||| ||||| Sbjct 56247 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTG-----AATCGGGT-TGAAAG 56300 Query 127 TCCCCG--GGCTTAACCTGG-GAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGAG 183 | | | | || |||| | | ||| | | || ||| ||||| | ||||| Sbjct 56301 TTAAAGTCGCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCACTTGAGTGAGACAGAG 56360 Query 184 GGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGC 243 | | |||||||| | |||||| ||||||| || |||| | | |||||| |||| || Sbjct 56361 GAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAGATCTACGAAGGAACGCCAAAAGC 56420 Query 244 GAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGG 303 ||||||||| | ||||| || |||||| | ||||||| |||||||| ||| || Sbjct 56421 GAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAACGGG 56480 Query 304 ATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 ||||||||||||||||||||| ||| |||||||| Sbjct 56481 ATTAGATACCCTGGTAGTCCATGCCGTAAACGAT 56514 >seq1931 Length=40595 Score = 163 bits (180), Expect = 7e-38 Identities = 239/337 (71%), Gaps = 2/337 (1%) Strand=Plus/Minus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || ||| ||||||||| ||||||||| |||||| || ||||||||| || ||| ||| Sbjct 9337 TATCTGGGGAATAAGCATCGGCTAACTCTGTGCCAACAACCGCGGTAAGACAGAGGATGC 9278 Query 63 AAGCGTTAATCGGAATTACTGGGCGT--AAAGCGTGCGCAGGCGGTTGTGTAAGACAGGT 120 |||||||| |||||| | ||||||| ||||||| | ||| || | | |||| | Sbjct 9277 AAGCGTTATCCGGAATGATTGGGCGTAAAAAGCGTATGTAGGTGGCTTTTTAAGTTCGCC 9218 Query 121 GTGAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCA 180 || ||||||| ||||| |||| ||| | | | ||| | ||||||| | | Sbjct 9217 GTAAAATCCCAGGGCTCAACCATGGATAGGTGGTGGAAACTACTAAGCTAGAGTACGGTA 9158 Query 181 GAGGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAAT 240 | || | |||||| | ||| ||| ||||||||||||| || ||||||||| | Sbjct 9157 GGGGCAGAGGGAATTTCTGGTGGAGCGATGAAATGCGTAGAGATAGAAAGGAACACCTGT 9098 Query 241 GGCGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAAC 300 |||||| || | |||| | |||||| || | |||||| | |||||||||| Sbjct 9097 GGCGAAAGCGCTCTGTTGGGCCGATACTGACACTGAGAGACGAAATCTAGGGGAGCAAAT 9038 Query 301 AGGATTAGATACCCTGGTAGTCCACGCCCTAAACGAT 337 |||||||| |||| ||||||| ||| |||||||| Sbjct 9037 GGGATTAGAGACCCCAGTAGTCCTAGCCGTAAACGAT 9001 >seq24 Length=780224 Score = 105 bits (116), Expect = 2e-20 Identities = 112/148 (76%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 190 GGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGGCGAAGGC 249 |||||| | ||| ||| ||||||||||||| || | ||||||||| |||||||| || Sbjct 4682 GGAATTTCCGGTGGAGCGATGAAATGCGTAGAGATCGGAAGGAACACCCATGGCGAAAGC 4623 Query 250 AGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAGGATTAGA 309 | ||||| | |||||| || | |||||||| |||||||||| |||||||| Sbjct 4622 GCTCTGCTGGGCCGATACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGA 4563 Query 310 TACCCTGGTAGTCCACGCCCTAAACGAT 337 |||| ||||||| ||| |||||||| Sbjct 4562 GACCCCAGTAGTCCTAGCCGTAAACGAT 4535 >seq215 Length=206220 Score = 93.3 bits (102), Expect = 1e-16 Identities = 80/99 (81%), Gaps = 0/99 (0%) Strand=Plus/Plus Query 8 GAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCG 67 || ||| |||| |||||||| | ||||| |||||||||||||| | | ||| ||||| | Sbjct 146029 GAGGAAGAAGCCCCGGCTAATTCCGTGCTAGCAGCCGCGGTAAGATGGGGGGGGCAAGTG 146088 Query 68 TTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGT 106 || ||||||| ||||||||||||| | || ||||||| Sbjct 146089 TTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 146127 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289246340096