Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq86 152 7e-35 seq2412 140 5e-31 seq413 87.8 2e-15 seq162 84.2 3e-14 seq976 78.8 1e-12 >seq86 Length=657349 Score = 152 bits (168), Expect = 7e-35 Identities = 181/243 (74%), Gaps = 12/243 (5%) Strand=Plus/Minus Query 6 CCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCACGGACC 65 ||||||| ||||||||||| ||||| | ||||||||| ||||| ||| ||| | || Sbjct 78532 CCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA-CTTAGCAGAGTCC 78474 Query 66 TGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCAACACG 125 |||||||||| |||||||||||| ||| || | | ||| | | | |||| | Sbjct 78473 TGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTAA--TCAAAAGA 78416 Query 126 TCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCT 185 | || || | ||||||||||||||||||||||||| ||||||||||| ||||| Sbjct 78415 T--------AGGAGAG-CACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCT 78365 Query 186 TAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACG 245 | || |||| | | | |||| |||||| |||||| || ||||||||||||||| | Sbjct 78364 TCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTACTTGTTCACCTGTGTCGGTTTGGG 78305 Query 246 GTA 248 ||| Sbjct 78304 GTA 78302 >seq2412 Length=28076 Score = 140 bits (154), Expect = 5e-31 Identities = 179/248 (72%), Gaps = 24/248 (10%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||||||||||||| || |||||| | ||||| | ||| || Sbjct 950 CTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTAC-GACTTTGCGG 892 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 ||||||||||||| |||||||||||| || || |||||||| || Sbjct 891 AGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCTCC--------- 841 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 || || || ||||||||||||||||||||||||||| |||||||||| Sbjct 840 --------TT----AGGAG--GCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAG 795 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 ||||||| | |||| | || | ||| ||||||||||||| | |||||||||||| Sbjct 794 TTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACCTACCTACCTGTGTCGGT 735 Query 241 TTACGGTA 248 || |||| Sbjct 734 TTCGGGTA 727 >seq413 Length=340812 Score = 87.8 bits (96), Expect = 2e-15 Identities = 74/91 (81%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 142 GCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCC 201 |||||||||||||||||||||||||| |||||||||| |||||| || |||| | | Sbjct 210956 GCACCCCTTCTCCCGAAGTTACGGGGTTATTTTGCCGAGTTCCTTCGACATGGTTCTCTC 211015 Query 202 GAACGCCTTAGTATTCTCTACCTGACCACCT 232 | |||| |||||| |||||| || ||||| Sbjct 211016 AAGCGCCCTAGTATACTCTACTTGTTCACCT 211046 >seq162 Length=603978 Score = 84.2 bits (92), Expect = 3e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 145 CCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACCCGAA 204 ||||||||||||||||||||||| ||||||||||| |||||| || |||| | | | Sbjct 402913 CCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAG 402972 Query 205 CGCCTTAGTATTCTCTACCTG 225 |||| |||||| |||||| || Sbjct 402973 CGCCCTAGTATACTCTACTTG 402993 >seq976 Length=164808 Score = 78.8 bits (86), Expect = 1e-12 Identities = 74/93 (80%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||| ||| | ||||||| || |||||| | ||||| ||| ||| Sbjct 154784 CTTAACCTTCCGGCACTGGGTAAGCGTCAGCCCCCATACATGGTCTTACAA-CTTTGCAG 154726 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCT 93 ||||||||||||| |||||||||||| ||||| Sbjct 154725 AGACCTGTGTTTTTGGTAAACAGTCGCCTCCCT 154693 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694215518752