Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07-
20] 27,424 sequences; 471,834,188 total letters
Query= AAMG01000599.1
Length=180
Score E
Sequences producing significant alignments: (Bits) Value
seq2412 93.3 4e-17
seq86 91.5 1e-16
seq976 73.4 4e-11
>seq2412
Length=28076
Score = 93.3 bits (102), Expect = 4e-17
Identities = 84/106 (79%), Gaps = 0/106 (0%)
Strand=Plus/Plus
Query 47 GGTCGAAGATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGA 106
||||| || |||||||| ||||||||||| |||||||||| ||| ||||| ||
Sbjct 844 GGTCGCAGTGACCAGGCCCGGGCGACTGTTTACCAAAAACACAGGTCTCCGCAAAGTCGT 903
Query 107 AAGTGGACGTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | |||| ||| |||||||||||| |||||||||||||||
Sbjct 904 AAGACCATGTATGGGGGCTGACGCCTGCCCAGTGCCGGAAGGTTAA 949
>seq86
Length=657349
Score = 91.5 bits (100), Expect = 1e-16
Identities = 77/95 (81%), Gaps = 0/95 (0%)
Strand=Plus/Plus
Query 55 ATACCAGGCCGCTGCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGAC 114
|||||||| | ||||||||||||||||||||||| ||||||| || | || ||
Sbjct 78439 ATACCAGGGGGTAGCGACTGTTTATTAAAAACACAGGACTCTGCTAAGTGGTAACACGAT 78498
Query 115 GTATAGGGTGTGACGCCTGCCCGGTGCCGGAAGGT 149
|||||| || |||| |||||||||||| |||||||
Sbjct 78499 GTATAGAGTCTGACACCTGCCCGGTGCTGGAAGGT 78533
>seq976
Length=164808
Score = 73.4 bits (80), Expect = 4e-11
Identities = 67/85 (79%), Gaps = 0/85 (0%)
Strand=Plus/Plus
Query 68 GCGACTGTTTATTAAAAACACAGCACTCTGCAAACACGAAAGTGGACGTATAGGGTGTGA 127
||||||||||| |||||||||| ||||||||| | ||| | |||| ||| |||
Sbjct 154699 GCGACTGTTTACCAAAAACACAGGTCTCTGCAAAGTTGTAAGACCATGTATGGGGGCTGA 154758
Query 128 CGCCTGCCCGGTGCCGGAAGGTTAA 152
||| | ||| |||||||||||||||
Sbjct 154759 CGCTTACCCAGTGCCGGAAGGTTAA 154783
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 476673328544
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |