Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq2412 282 1e-73 seq86 248 2e-63 seq280 196 1e-47 seq31 178 3e-42 seq879 141 2e-31 seq736 140 8e-31 seq976 95.1 3e-17 seq32 93.3 1e-16 seq443 91.5 4e-16 seq162 84.2 6e-14 seq1943 82.4 2e-13 seq413 78.8 2e-12 >seq2412 Length=28076 Score = 282 bits (312), Expect = 1e-73 Identities = 307/411 (75%), Gaps = 31/411 (8%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 1135 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 1076 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1016 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || |||||| | | || | ||| Sbjct 1015 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTTCCCTGTCATCAGGTCACCA 956 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | ||||||||||||||| |||||||||||| ||| |||| | ||| || ||| Sbjct 955 ACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 896 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATGAG 308 || ||| |||||||||| ||||||||||| |||||||| || ||||| Sbjct 895 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC------TC 842 Query 309 CTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCTTT 368 |||| ||| ||| | ||||||||||||||||||| || || Sbjct 841 CTTA-GGA--------------------GGCACCCCTTCTCCCGAAGTTACGGGGCTATT 803 Query 369 TTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTACC 419 ||||| |||||||| ||||| |||| || ||| ||||||||||||| Sbjct 802 TTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCCCCTAGGTATTCTCTACC 752 >seq86 Length=657349 Score = 248 bits (274), Expect = 2e-63 Identities = 302/412 (73%), Gaps = 21/412 (5%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 78718 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 78659 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 78658 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 78599 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | |||| ||||| ||||||||||||||||||||| || | ||||| || | || Sbjct 78598 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCTT----ATAAC--AC 78545 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | ||||||| |||||||||||| |||| || |||||| || || | | Sbjct 78544 TTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCACT 78485 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGCATG 306 | ||||||| ||||||||||||||||||||||| | |||||||| | | | | | Sbjct 78484 TAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCCTA 78425 Query 307 AGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTGCCT 366 | | | || || |||| ||||||||||||||||||| | | Sbjct 78424 ATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGGTCA 78380 Query 367 TTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 78379 TTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 78328 >seq280 Length=430711 Score = 196 bits (216), Expect = 1e-47 Identities = 205/269 (76%), Gaps = 4/269 (1%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 200072 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAAATCGTT 200013 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||| | ||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 200012 ACGCCTTTCGTTCGGGTCGGAACTTACCCGACAAGGAATTTTTCTACCTTAGGACCGTTA 199953 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCC 188 | ||| ||| |||||| || ||||||||| || |||||| | | || ||||| Sbjct 199952 TAATTATGGCTGCCGTTCACAGGGGCTTCGGTCGCCAGCTTCCCTGTCATCAGGTAACCA 199893 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | ||||||||| |||| ||||||| |||| ||| |||| | ||| | ||| Sbjct 199892 ACTTCCTTAACCTTCTGGCATTGGGCAGGTGTCAACCCCCATACATGGTCTTACAACTTT 199833 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTC 277 || ||| |||||||||| |||||| || Sbjct 199832 GCGGAGACCTGTGTTTTTGGTAAACAATC 199804 >seq31 Length=1468034 Score = 178 bits (196), Expect = 3e-42 Identities = 153/189 (81%), Gaps = 4/189 (2%) Strand=Plus/Plus Query 27 ATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCCATTCGTGCA 86 || || ||||||| ||||||| ||||||| ||| ||||||||||| ||||||| Sbjct 453516 ATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCG 453575 Query 87 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACGGCCGCC 146 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| Sbjct 453576 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCC 453635 Query 147 GTTTACCGGGGCTTCGATCAAGAGCTTC----GCGTTAGCTAACCCCATCAATTAACCTT 202 ||| |||||||||||| || |||||| | | || | ||| | |||||||| Sbjct 453636 GTTCACCGGGGCTTCGGTCGCCAGCTTCCCTGTCATCAGGTCACCAACTTCCTTAACCTT 453695 Query 203 CCGGCACCG 211 ||||||||| Sbjct 453696 CCGGCACCG 453704 >seq879 Length=184597 Score = 141 bits (156), Expect = 2e-31 Identities = 104/121 (86%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 114626 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 114567 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| ||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 114566 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAAGACCGTTA 114507 Query 133 T 133 | Sbjct 114506 T 114506 >seq736 Length=307973 Score = 140 bits (154), Expect = 8e-31 Identities = 122/152 (80%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| | Sbjct 72752 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGACA 72693 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| ||||||||||||| |||||||||||| Sbjct 72692 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGA 72633 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGC 158 | |||| ||||| | ||||| |||||| ||| Sbjct 72632 CAGTTAGAGTTACTGTCGCCGCTTACCGAGGC 72601 >seq976 Length=164808 Score = 95.1 bits (104), Expect = 3e-17 Identities = 110/148 (74%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 136 TTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACCCCAT 191 |||||||||||||| |||||||||||| || |||||| | | || | ||| | Sbjct 154846 TTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTTCCCTATCATCAGGTCACCAACT 154787 Query 192 CAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCA 251 ||||||||||||||| ||| | |||||| ||| |||| | ||| | |||||| Sbjct 154786 TCCTTAACCTTCCGGCACTGGGTAAGCGTCAGCCCCCATACATGGTCTTACAACTTTGCA 154727 Query 252 GAGTGCTGTGTTTTTAATAAACAGTCGC 279 ||| |||||||||| ||||||||||| Sbjct 154726 GAGACCTGTGTTTTTGGTAAACAGTCGC 154699 >seq32 Length=1303039 Score = 93.3 bits (102), Expect = 1e-16 Identities = 53/54 (98%), Gaps = 0/54 (0%) Strand=Plus/Minus Query 87 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTTACG 140 ||||||||||||||||||||||||||||||||||||||||||||||| |||||| Sbjct 454238 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACG 454185 >seq443 Length=327196 Score = 91.5 bits (100), Expect = 4e-16 Identities = 177/259 (68%), Gaps = 7/259 (3%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || || |||||||| ||| | || || | || | Sbjct 227345 TACTCCGCATCTTCACGGAGAATTAAATTTCACCAGGTCCATGTCGGGGATAACGGGGTA 227286 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||| |||| || |||| || |||| ||||| ||| |||||||||||| |||||| || Sbjct 227285 ATCATTACACCGTTCGAGCTTGTCGCTACTTATGCGATAAGGAATTTCGCCACCTTATGA 227226 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAGCTAAC 186 | ||| ||||| | ||| |||| | ||| || || | ||| | || | || Sbjct 227225 CAATTAGAGTTACTACTGCCATTTATC-AGGCATCCATTTAAAGCAT----ATAAC--AC 227173 Query 187 CCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGT 246 | | || ||||||| |||||||||||| |||| || ||||| || || | | Sbjct 227172 TTCTGCTTTTGACCTTCCAGCACCGGGCAGGTGTCAAACTCTATAAATCGTGTTACCACT 227113 Query 247 TTGCAGAGTGCTGTGTTTT 265 | ||||||| |||||| || Sbjct 227112 TAGCAGAGTCCTGTGTATT 227094 >seq162 Length=603978 Score = 84.2 bits (92), Expect = 6e-14 Identities = 64/76 (84%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | | ||||||| ||||||||| | ||||||||||||| Sbjct 402915 CCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCG 402974 Query 403 CCTTGGTATTCTCTAC 418 || | |||| |||||| Sbjct 402975 CCCTAGTATACTCTAC 402990 >seq1943 Length=39883 Score = 82.4 bits (90), Expect = 2e-13 Identities = 69/85 (81%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||||||| ||||||| ||| |||||| Sbjct 33151 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 33092 Query 73 ACGCCATTCGTGCAGGTCGGAACTT 97 ||||| ||||||| ||||||||||| Sbjct 33091 ACGCCTTTCGTGCGGGTCGGAACTT 33067 >seq413 Length=340812 Score = 78.8 bits (86), Expect = 2e-12 Identities = 63/76 (83%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| | ||||||| ||||||||| | ||||||||||||| Sbjct 210961 CCTTCTCCCGAAGTTACGGGGTTATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCG 211020 Query 403 CCTTGGTATTCTCTAC 418 || | |||| |||||| Sbjct 211021 CCCTAGTATACTCTAC 211036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260454238208