Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq2412 361 1e-97 seq280 288 2e-75 seq86 273 5e-71 seq31 190 4e-46 seq879 161 2e-37 seq736 125 2e-26 seq976 113 1e-22 seq443 102 2e-19 seq32 102 2e-19 seq1943 100 6e-19 seq759 98.7 2e-18 seq20 87.8 4e-15 seq269 80.6 6e-13 seq56 77.0 7e-12 seq413 73.4 8e-11 seq162 73.4 8e-11 >seq2412 Length=28076 Score = 361 bits (400), Expect = 1e-97 Identities = 293/350 (84%), Gaps = 6/350 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 1135 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 1076 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1075 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 1016 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 ||||||||||||||||| || ||||||| || | ||||| | | || | || Sbjct 1015 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTTCCCTGTCATCAGGTCACCA 956 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | |||||||||||| |||| |||||||||||||| || |||||| ||||| |||||| Sbjct 955 ACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATACATGGTCTTACGACTTT 896 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || ||||||||||||||||||||||||| |||||| || ||||| ||| | ||| Sbjct 895 GCGGAGACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACCT-CCTTAG 837 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTA 352 |||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 836 -GAGGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTA 788 >seq280 Length=430711 Score = 288 bits (318), Expect = 2e-75 Identities = 272/344 (79%), Gaps = 6/344 (2%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | |||||||||||||||||||| Sbjct 200072 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAAATCGTT 200013 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| Sbjct 200012 ACGCCTTTCGTTCGGGTCGGAACTTACCCGACAAGGAATTTTTCTACCTTAGGACCGTTA 199953 Query 127 TAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAG 182 || ||| ||| |||||| || ||||||| || | ||||| | | || |||| Sbjct 199952 TAATTATGGCTGCCGTTCACAGGGGCTTCGGTCGCCAGCTTCCCTGTCATCAGGTAACCA 199893 Query 183 ATCCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTA 242 | ||||||||||| ||| ||||||| |||| | || |||||| ||||| | |||| Sbjct 199892 ACTTCCTTAACCTTCTGGCATTGGGCAGGTGTCAACCCCCATACATGGTCTTACAACTTT 199833 Query 243 GCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTCATAG 302 || || |||||||||||||||||||| || |||| | | || |||| || || | Sbjct 199832 GCGGAGACCTGTGTTTTTGGTAAACAATCACTTGAACTTGGTCATTGCGACC--TCCTTA 199775 Query 303 ACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGT 346 | || |||| |||||||||||||||||||| |||||||||||| Sbjct 199774 AGAGACACCGCTTCTCCCTAAGTTACGGGGCTATTTTGCCGAGT 199731 >seq86 Length=657349 Score = 273 bits (302), Expect = 5e-71 Identities = 286/376 (76%), Gaps = 20/376 (5%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 78718 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 78659 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| |||||||||||||||||||||||||| Sbjct 78658 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 78599 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | |||| |||||| |||||||||||| ||||||| |||| ||| | |||| Sbjct 78598 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTCCATTCAAAGCT--------TATAAC 78547 Query 181 AGATCCCCTT--AACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || |||| |||||||||||||||||||| ||||| ||||||||||| || | | Sbjct 78546 ACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACCA 78487 Query 239 CTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCGGCCTGTC 298 ||||||||| ||||||||||| |||||||||||| ||| | | ||| || | | Sbjct 78486 CTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTCC 78427 Query 299 ------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTC 348 | ||| || |||||||||||||| ||||||||||||||||||||||||||| Sbjct 78426 TAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTC 78367 Query 349 CTTAACAATAGTTCTC 364 ||| || |||||| Sbjct 78366 CTTCGACATGGTTCTC 78351 >seq31 Length=1468034 Score = 190 bits (210), Expect = 4e-46 Identities = 119/128 (93%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 27 ATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTTACGCCTTTCGTGCGGGTCGG 86 |||||||||||||| | ||||||||||||| |||||||||||||||||||||||||| Sbjct 453522 ATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGG 453581 Query 87 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTAC 146 |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| || Sbjct 453582 AACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGACCGCCGTTCAC 453641 Query 147 TGGGGCTT 154 ||||||| Sbjct 453642 CGGGGCTT 453649 >seq879 Length=184597 Score = 161 bits (178), Expect = 2e-37 Identities = 109/122 (89%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 114626 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 114567 Query 67 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 126 ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 114566 ACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAAGACCGTTA 114507 Query 127 TA 128 || Sbjct 114506 TA 114505 >seq736 Length=307973 Score = 125 bits (138), Expect = 2e-26 Identities = 119/152 (78%), Gaps = 0/152 (0%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||||| ||| || ||||||| | | Sbjct 72752 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGACA 72693 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||||||| || ||||||| ||||| ||||| ||||||||||||| |||||||||||| Sbjct 72692 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGA 72633 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGC 152 | |||| |||||| | ||||| |||| | ||| Sbjct 72632 CAGTTAGAGTTACTGTCGCCGCTTACCGAGGC 72601 >seq976 Length=164808 Score = 113 bits (124), Expect = 1e-22 Identities = 115/148 (78%), Gaps = 4/148 (3%) Strand=Plus/Minus Query 130 TTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGAT-TGCTC---TAACAGATC 185 |||||||||||||| || ||||||| || | ||||| | | || | || | Sbjct 154846 TTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTTCCCTATCATCAGGTCACCAACT 154787 Query 186 CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCA 245 |||||||||||| |||| ||| | |||||||| || |||||| ||||| | |||| ||| Sbjct 154786 TCCTTAACCTTCCGGCACTGGGTAAGCGTCAGCCCCCATACATGGTCTTACAACTTTGCA 154727 Query 246 GAAACCTGTGTTTTTGGTAAACAGTCGC 273 || ||||||||||||||||||||||||| Sbjct 154726 GAGACCTGTGTTTTTGGTAAACAGTCGC 154699 >seq443 Length=327196 Score = 102 bits (112), Expect = 2e-19 Identities = 180/261 (69%), Gaps = 11/261 (4%) Strand=Plus/Minus Query 1 TACCCGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAA 60 ||| | |||||||||| | || | ||||||||| ||| || | || | | | Sbjct 227345 TACTCCGCATCTTCACGGAGAATTAAATTTCACCAGGTCCATGTCGGGGATAACGGGGTA 227286 Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 ||| |||| || |||| || |||| ||||| ||| |||||||||||| |||||| || Sbjct 227285 ATCATTACACCGTTCGAGCTTGTCGCTACTTATGCGATAAGGAATTTCGCCACCTTATGA 227226 Query 121 CCGTTATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAAC 180 | ||| |||||| | ||| |||| | ||| | || | || | |||| Sbjct 227225 CAATTAGAGTTACTACTGCCATTTA-TCAGGCATCCATTTAAAGC--------ATATAAC 227175 Query 181 AGATC--CCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGA 238 | || | || |||||||||||||||||||| |||| ||||| ||||| || | | Sbjct 227174 ACTTCTGCTTTTGACCTTCCAGCACCGGGCAGGTGTCAAACTCTATAAATCGTGTTACCA 227115 Query 239 CTTAGCAGAAACCTGTGTTTT 259 ||||||||| ||||||| || Sbjct 227114 CTTAGCAGAGTCCTGTGTATT 227094 >seq32 Length=1303039 Score = 102 bits (112), Expect = 2e-19 Identities = 56/56 (100%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 79 CGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACG 134 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454240 CGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACG 454185 >seq1943 Length=39883 Score = 100 bits (110), Expect = 6e-19 Identities = 73/85 (86%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 7 GCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCGTT 66 |||||||||| | || | |||||||||||||| | ||||||||||||| |||||| Sbjct 33151 GCATCTTCACAGACATGTCTATTTCACCGAGTCTCTCTCCGAGACAGTGCCCAGATCGTT 33092 Query 67 ACGCCTTTCGTGCGGGTCGGAACTT 91 ||||||||||||||||||||||||| Sbjct 33091 ACGCCTTTCGTGCGGGTCGGAACTT 33067 >seq759 Length=309720 Score = 98.7 bits (108), Expect = 2e-18 Identities = 122/164 (74%), Gaps = 6/164 (4%) Strand=Plus/Minus Query 193 CCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAGAAACCT 252 |||| | |||| ||| |||||||| | | ||| || ||||| |||||| ||| | || | Sbjct 176135 CCTTTCGGCACTGGGTAGGCGTCAACCCTCATATATGGTCTTACGACTTTGCATAGACAT 176076 Query 253 GTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGC---GGC--CTGTCATAGACAGG 307 ||||||||||| |||| ||||| | || | || |||| || | | ||| | | Sbjct 176075 GTGTTTTTGGTCAACAATCGCTCGAGCTTGGTCACTGCAAGTGCAACCTCCTTAG-GAAG 176017 Query 308 CACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTT 351 ||||||||||||| |||||||| || |||||||| ||||| || Sbjct 176016 CACCCCTTCTCCCAAAGTTACGAGGCTATTTTGCCAAGTTCTTT 175973 >seq20 Length=393105 Score = 87.8 bits (96), Expect = 4e-15 Identities = 130/182 (71%), Gaps = 22/182 (12%) Strand=Plus/Plus Query 177 TAACAGATCCCCTTA--ACCTTCCAGCACCGGGCAGGCGTCAG------CTCC---TATA 225 ||||| || |||| |||||||||||||||||||| |||| ||| |||| Sbjct 143204 TAACACTTCTCCTTCCGACCTTCCAGCACCGGGCAGGTGTCATGTTAGACTCTATATATA 143263 Query 226 CATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTC 285 |||||| || | |||||||| | ||||||||||| |||||||||||| || | | Sbjct 143264 CATCGTGTTACCACTTAGCACAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCGA-TA 143322 Query 286 TCTGCGGCCTGTC------ATAGACAG----GCACCCCTTCTCCCTAAGTTACGGGGTCA 335 | ||| || | | | ||| || |||||||||||||| ||| |||||||||| Sbjct 143323 TGTGCCGCTTTCCTAATCAAAAGATAGGAGAGCACCCCTTCTCCCGAAGCTACGGGGTCA 143382 Query 336 TT 337 || Sbjct 143383 TT 143384 >seq269 Length=519709 Score = 80.6 bits (88), Expect = 6e-13 Identities = 55/62 (89%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 61 ATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 120 |||||||| ||||||||||| || |||||| ||| |||||||||||| |||||||||| | Sbjct 341015 ATCGTTACACCTTTCGTGCGAGTTGGAACTGACCTGACAAGGAATTTTGCTACCTTAGAA 341074 Query 121 CC 122 || Sbjct 341075 CC 341076 >seq56 Length=960176 Score = 77.0 bits (84), Expect = 7e-12 Identities = 81/105 (77%), Gaps = 9/105 (9%) Strand=Plus/Minus Query 187 CCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGCAG 246 |||||||||||| ||| |||||||||||||| || |||||| | |||| || | Sbjct 801466 CCTTAACCTTCCGGCATTGGGCAGGCGTCAGCCCCCATACATGG--TTGC------GCGG 801415 Query 247 AAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG 291 | |||||||||||||| ||||||||| || ||| || ||||| Sbjct 801414 AGGCCTGTGTTTTTGGTTAACAGTCGC-CGGACCTGGTCACTGCG 801371 >seq413 Length=340812 Score = 73.4 bits (80), Expect = 8e-11 Identities = 51/58 (88%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 307 GCACCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 |||||||||||||| |||||||||||| ||||||||||||||||| || |||||| Sbjct 210956 GCACCCCTTCTCCCGAAGTTACGGGGTTATTTTGCCGAGTTCCTTCGACATGGTTCTC 211013 >seq162 Length=603978 Score = 73.4 bits (80), Expect = 8e-11 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 310 CCCCTTCTCCCTAAGTTACGGGGTCATTTTGCCGAGTTCCTTAACAATAGTTCTC 364 ||||||||||| |||||||||||||||||||||||||||||| || |||||| Sbjct 402913 CCCCTTCTCCCGAAGTTACGGGGTCATTTTGCCGAGTTCCTTCGACATGGTTCTC 402967 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062108647424