Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq1943 365 1e-98 seq86 197 4e-48 seq1116 167 7e-39 seq683 140 1e-30 seq261 122 3e-25 seq421 107 6e-21 seq188 107 6e-21 seq334 87.8 5e-15 seq83 77.0 1e-11 seq186 75.2 3e-11 seq52 75.2 3e-11 >seq1943 Length=39883 Score = 365 bits (404), Expect = 1e-98 Identities = 297/356 (83%), Gaps = 3/356 (1%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 27684 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 27743 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| |||| |||||||||||||||| |||||||| | || |||| Sbjct 27744 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATGCCGCGAATCCTC 27803 Query 121 TAGAGATAGAGGTTTCCCCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAG 180 | || | |||| | || |||||| || | ||||||| ||||||| ||||||||| Sbjct 27804 TTGAAAGGGAGGAGTGCC-TTCGGGA-ACGCGGACACAGGTGGTGCATGGCTGTCGTCAG 27861 Query 181 CTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGC 240 |||||| |||||| ||||||||||||||||||||||||||||||||| | |||||||| Sbjct 27862 CTCGTGCCGTGAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGC 27921 Query 241 CATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGAC 300 || | || |||| || || || | |||||||||||| || ||||||||||||| ||| Sbjct 27922 CAACGTTTAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGAT 27981 Query 301 GACGTCAAATCATCATGCCCCTTA-TGATTTGGGCTACACACGTGCTACAATGGAC 355 |||||||| ||||||||||||||| || ||||| |||||||||||||||||||| Sbjct 27982 GACGTCAAGTCATCATGCCCCTTACTGCCCTGGGCGACACACGTGCTACAATGGAC 28037 Score = 223 bits (246), Expect = 1e-55 Identities = 190/232 (82%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTA-T 325 |||||||||||| || ||||||||||||| ||| |||||||| ||||||||||||||| | Sbjct 28253 GACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGCCCCTTACT 28312 Query 326 GATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCA 385 | ||||| |||||||||||||||||||| ||||||| |||| |||||||| Sbjct 28313 GCCCTGGGCGACACACGTGCTACAATGGACGGGACAAAGGATCGCGACCCCGCGAGGGTG 28372 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| || || ||| || ||||||||||||||||| |||||||||| ||| |||||| Sbjct 28373 AGCTAACTTCAAAAACCCGTCCTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGAAG 28432 Query 446 CTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 | ||||||||||||||||| | |||| ||| | |||||||| |||||||| Sbjct 28433 CCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATCCGTTCCCG 28484 >seq86 Length=657349 Score = 197 bits (218), Expect = 4e-48 Identities = 186/236 (79%), Gaps = 1/236 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 ||||||| |||| | || ||||||||||||||| |||||||| || |||| |||||||| Sbjct 57249 GACTGCCAGTGAGATACTGGAGGAAGGTGGGGATGACGTCAAGTCCGCATGGCCCTTATG 57308 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAA 386 ||||| |||||||||||||||||| | ||||| ||| ||| | | | ||| | Sbjct 57309 GGCTGGGCCACACACGTGCTACAATGGCAATTACAATGGGAAGCAAGGCTGTAAGGCGGA 57368 Query 387 GCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGC 446 || ||| || |||| | ||||||||||||||| ||||||||||| | |||||| Sbjct 57369 GCGAAT-CCGGAAAGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACATGAAGT 57427 Query 447 TGGAATCGCTAGTAATCGTAGATCAGCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||||||||||||||| ||||||||||| ||||||||| || |||| |||| Sbjct 57428 TGGAATCGCTAGTAATCGCGGATCAGCATGCCGCGGTGAATAGGTACCCGGGCCCT 57483 Score = 172 bits (190), Expect = 2e-40 Identities = 180/234 (77%), Gaps = 17/234 (7%) Strand=Plus/Plus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| || |||||||||||||||||| Sbjct 56582 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCCTGCACAAGCGGTGGAGCAT 56641 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCTCTGACCCCTC 120 |||||||||||||| ||||||| | |||||||||| ||||||| | ||| | Sbjct 56642 GTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACA---TATGA----AC 56694 Query 121 TAGAGATAGAGGTTTCCCCTTCGG---GGGACAGAGT----GACAGGTGATGCATGGTTG 173 ||| | | | ||| ||| || || || | ||||||| ||||||| || Sbjct 56695 AAGA---AAACCTGTCCTTAACGGGATGGTACTGACTTTCATACAGGTGCTGCATGGCTG 56751 Query 174 TCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 ||||||||||||||||||||||||| ||| |||||| |||||||| |||||| Sbjct 56752 TCGTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTCCTATAACGAGCGAAACCCT 56805 >seq1116 Length=136914 Score = 167 bits (184), Expect = 7e-39 Identities = 133/159 (84%), Gaps = 1/159 (1%) Strand=Plus/Plus Query 138 CCTTCGGGGGACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGT 197 |||||||| || || ||||||| ||||||| ||||||||||||||| |||||| ||| Sbjct 130630 CCTTCGGGA-ACGCAGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTGAGGTGT 130688 Query 198 TGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCA 257 |||||||||||||||||||||||||||||| | |||||||||| | || |||| || | Sbjct 130689 TGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCAACGTTTAGTTTGGAA 130748 Query 258 CTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGG 296 | || | |||||||||||| || |||||||||||||| Sbjct 130749 CCCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGG 130787 >seq683 Length=235598 Score = 140 bits (154), Expect = 1e-30 Identities = 159/211 (75%), Gaps = 17/211 (8%) Strand=Plus/Plus Query 24 AAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCG 83 ||||||||||||||| | |||||||| ||||||||||||||||||||||| ||||||| Sbjct 274 AAGGAATTGACGGGGGACTGCACAAGCAGTGGAGCATGTGGTTTAATTCGATACAACGCG 333 Query 84 AAGAACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCG 143 | |||||||||| ||||||| | ||| | ||| | | | ||| || Sbjct 334 CAAAACCTTACCAGCCCTTGACA---TATGA----ACAAGA---AAACCTGTCCTTAACG 383 Query 144 G---GGGACAGAGT----GACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATG 196 | || || || | ||||||| ||||||| ||||||||||||||||||||||||| Sbjct 384 GGATGGTACTGACTTTCATACAGGTGCTGCATGGCTGTCGTCAGCTCGTGTCGTGAGATG 443 Query 197 TTGGGTTAAGTCCCGCAACGAGCGCAACCCT 227 || ||| |||||| |||||||| || ||| Sbjct 444 TTCGGTCAAGTCCTATAACGAGCGAAATCCT 474 >seq261 Length=455986 Score = 122 bits (134), Expect = 3e-25 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||||||| | |||||||||||||||||| Sbjct 221154 TACGGTCGCAAGACCGAAACTCAAAGGAATTGACGGGGGCTTGCACAAGCGGTGGAGCAT 221095 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 |||||||||||||| ||||||| | |||| ||||| |||||||| Sbjct 221094 GTGGTTTAATTCGATACAACGCGTAAAACCGTACCAGCCCTTGACAT 221048 >seq421 Length=851988 Score = 107 bits (118), Expect = 6e-21 Identities = 124/165 (75%), Gaps = 4/165 (2%) Strand=Plus/Minus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTA-T 325 |||| ||||||| || ||||||||| ||| ||| ||| ||||||||| ||||||| | Sbjct 133020 GACTACCGGTGATAAGCCGGAGGAAAGTGAGGATGACATCAAATCATT---CCCCTTACT 132964 Query 326 GATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCA 385 | |||| | ||| | |||||||||||||| ||||||| |||| ||| |||| Sbjct 132963 GCCTTGGACGACATAAGTGCTACAATGGACGGGACAAAGGATTGCGATCCCGTGAGGGTG 132904 Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430 ||| || || ||| || ||||||| ||||||||| |||||| Sbjct 132903 AGCTAACTTCAAAAACCCGTCCTCAGTTTGGATTGTAGGCTGCAA 132859 >seq188 Length=569116 Score = 107 bits (118), Expect = 6e-21 Identities = 116/151 (77%), Gaps = 2/151 (1%) Strand=Plus/Plus Query 353 GACAAT-ACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGTTCTCAG 411 |||||| |||| ||| ||| | || | ||| ||| ||||| || ||| ||||| Sbjct 435354 GACAATTACAATGGGAAGCAAGACTGTAAGGCGGAGCGAATCCGGAAAGATTGC-CTCAG 435412 Query 412 TTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTAGATCA 471 |||||||||| ||||||||||| | |||||| |||||||||||||||||| ||||| Sbjct 435413 TTCGGATTGTTCTCTGCAACTCGGGAACATGAAGTTGGAATCGCTAGTAATCGCGGATCA 435472 Query 472 GCATGCTACGGTGAATACGTTCCCGCTCCCT 502 |||||| ||||||||| || ||| |||| Sbjct 435473 GCATGCCGCGGTGAATAGGTATCCGGGCCCT 435503 >seq334 Length=386962 Score = 87.8 bits (96), Expect = 5e-15 Identities = 74/90 (82%), Gaps = 1/90 (1%) Strand=Plus/Minus Query 407 CTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCGTA 466 ||||||||||||||||| |||||||||| ||| |||| || |||| |||||||||| Sbjct 332051 CTCAGTTCGGATTGTAGGCTGCAACTCGCCTACATGACGCCGGAAGTGCTAGTAATCACC 331992 Query 467 GATCAG-CATGCTACGGTGAATACGTTCCC 495 | |||| ||| | |||||||| ||||||| Sbjct 331991 GGTCAGTCATACGGCGGTGAATCCGTTCCC 331962 >seq83 Length=652123 Score = 77.0 bits (84), Expect = 1e-11 Identities = 115/161 (71%), Gaps = 2/161 (1%) Strand=Plus/Plus Query 336 ACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCC 395 |||||| ||||| |||||| |||||| |||| || ||| ||| || Sbjct 448769 ACACACATGCTAAAATGGATGGGGCAAAGGATTGCGACCATGCAAGGGTTAGCTAACTTA 448828 Query 396 ATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGC 455 | ||| | || || |||| ||||| |||| || |||||| ||| |||||| ||||||||| Sbjct 448829 AAAAATTAGTCCT-AGTTTGGATTATAGTATGTAACTCGCCTACATGAAGTTGGAATCGC 448887 Query 456 TAGTAATCGTAGATCA-GCATGCTACGGTGAATACGTTCCC 495 ||| |||||| | ||| ||| | | ||||||| ||| || Sbjct 448888 TAGCAATCGTCGGTCATTCATACAGCTGTGAATATGTTTCC 448928 >seq186 Length=570249 Score = 75.2 bits (82), Expect = 3e-11 Identities = 62/75 (83%), Gaps = 2/75 (3%) Strand=Plus/Minus Query 23 AAAGGAATTGACGGGGACCC--GCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAAC 80 |||| ||||||| ||| | | |||||||| |||||||||||| ||||||| || |||| Sbjct 145006 AAAGAAATTGACAGGGGCGCTTGCACAAGCAGTGGAGCATGTGATTTAATTTGATACAAC 144947 Query 81 GCGAAGAACCTTACC 95 ||| | ||||||||| Sbjct 144946 GCGCAAAACCTTACC 144932 >seq52 Length=1002695 Score = 75.2 bits (82), Expect = 3e-11 Identities = 54/61 (89%), Gaps = 1/61 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| ||||||||||||||||||| ||| ||||||||||||||||||||| Sbjct 83669 TACGTTCGCAAGAA-GAAACTCAAAGGAATTGACAGGGGCCCGCACAAGCGGTGGAGCAT 83611 Query 61 G 61 | Sbjct 83610 G 83610 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1503587543040