Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1431 300 2e-79 seq6 257 3e-66 seq255 226 5e-57 seq357 129 9e-28 seq660 95.1 2e-17 seq894 87.8 3e-15 >seq1431 Length=89469 Score = 300 bits (332), Expect = 2e-79 Identities = 225/261 (86%), Gaps = 6/261 (2%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 29036 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 29095 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGAAGCCAG 119 |||||||||||||||||||||| | | || |||| | |||||||||||||||||| | Sbjct 29096 CCTGTTATTGCCTCAAACTTCCGTGGCCT--AAGCGGCCATAGTCCCTCTAAGAAGCTGG 29153 Query 120 CCACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAA 177 || | | || | | ||||||||||||| | ||||||||||||||| ||||| Sbjct 29154 CCGTGGAGGGTTACCTCCACGTAGCTATTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAA 29213 Query 178 TTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 237 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 29214 TTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCA 29273 Query 238 AGAAAGAGCTATCAATCTGTC 258 |||||||||| ||| |||||| Sbjct 29274 AGAAAGAGCTCTCAGTCTGTC 29294 Score = 141 bits (156), Expect = 1e-31 Identities = 101/114 (89%), Gaps = 4/114 (4%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33530 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 33589 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAATAGTCCCTCTAAGA 113 |||||||||||||||||||||| | | || |||| | ||||||||||||||| Sbjct 33590 CCTGTTATTGCCTCAAACTTCCGTGGCCT--AAGCGGCCATAGTCCCTCTAAGA 33641 >seq6 Length=1263909 Score = 257 bits (284), Expect = 3e-66 Identities = 213/259 (82%), Gaps = 2/259 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||| ||| ||||||||||||||||||||||||||||||| Sbjct 297648 ACTCGTTGAATACATCAGTGTAGCACGCATGCGGCCCAGAACATCTAAGGGCATCACAGA 297589 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||| ||||| | | || | | |||||||||||||||||| ||| Sbjct 297588 CCTGTTATTGCCTCAAGCTTCCGTGGCCTAAGTGGCCATAGTCCCTCTAAGAAGCTGGCC 297529 Query 122 ACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 | | || | | ||||||||| ||| | | ||||||||||||| ||||||| Sbjct 297528 GTGGAGGGTTACCTCCACGTAGCTATTTAGAAGGCTGAAGTCTCGTTCGTTAACGGAATT 297469 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 ||| ||||||||| ||||||||||||||||||| |||||||||||| ||||| ||||||| Sbjct 297468 AACTAGACAAATCGCTCCACCAACTAAGAACGGTCATGCACCACCATCCATATAATCAAG 297409 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| ||| |||||| Sbjct 297408 AAAGAGCTCTCAGTCTGTC 297390 >seq255 Length=465567 Score = 226 bits (250), Expect = 5e-57 Identities = 175/205 (85%), Gaps = 6/205 (3%) Strand=Plus/Plus Query 43 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGC--CAAT 100 ||||||||||||||||||||||||||||||||||||||||| | | || |||| | || Sbjct 377805 CATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCGTGGCCT--AAGCGGCCAT 377862 Query 101 AGTCCCTCTAAGAAGCCAGCCACCAACCATAG--TCGATGGGGCTATTTAGCAGGTTAAG 158 |||||||||||||||| ||| | | || | ||||||||||||| | || Sbjct 377863 AGTCCCTCTAAGAAGCTGGCCGTGGAGGGTTACCTCCACATAGCTATTTAGCAGGCTGAG 377922 Query 159 GTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGC 218 ||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| Sbjct 377923 GTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGC 377982 Query 219 ACCACCACCCATAGAATCAAGAAAG 243 ||||||||||||||||||||||||| Sbjct 377983 ACCACCACCCATAGAATCAAGAAAG 378007 >seq357 Length=372328 Score = 129 bits (142), Expect = 9e-28 Identities = 91/104 (88%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCA 201 |||||||||| ||| ||||||| || | || || |||||| ||||||||| ||| |||| Sbjct 103880 CTATTTAGCATGTTGAGGTCTCATTTGATAACGAAATTAATCAGACAAATTGCTCTACCA 103821 Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 ||||| ||||||||||||||||||| |||||||||||||||||| Sbjct 103820 ACTAAAAACGGCCATGCACCACCACTCATAGAATCAAGAAAGAG 103777 >seq660 Length=244916 Score = 95.1 bits (104), Expect = 2e-17 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||| ||| |||||| || |||||||||||||||||||||||| Sbjct 33347 ACTCGTTGAATACATCAGTGTTGCGTGCGTGCAGCTCAGAACATCTAAGGGCATCACAGA 33288 Query 62 CCTGTTATTGCCTCAAACTT 81 | |||||||| ||||||||| Sbjct 33287 CATGTTATTGTCTCAAACTT 33268 >seq894 Length=192835 Score = 87.8 bits (96), Expect = 3e-15 Identities = 68/80 (85%), Gaps = 7/80 (9%) Strand=Plus/Minus Query 44 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGC-----TGGAAGC-- 96 |||||||||||||||||||||||||||||||||||||||||| | | ||||| Sbjct 40175 ATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATAGTCCCTCTAAGAAGCGA 40116 Query 97 CAATAGTCCCTCTAAGAAGC 116 | |||||||||||||||||| Sbjct 40115 CCATAGTCCCTCTAAGAAGC 40096 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796588314144