Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq559 343 3e-92 seq1336 253 3e-65 seq134 197 2e-48 seq1431 129 1e-27 seq1060 114 2e-23 >seq559 Length=279220 Score = 343 bits (380), Expect = 3e-92 Identities = 227/250 (91%), Gaps = 1/250 (0%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || |||||||||||||||||||||||||||||| Sbjct 139232 TACTAGGTTGAATTACTATTGCGAC-ACTATCATCAGTAGGGTAAAACTAACCTGTCTCA 139174 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 139173 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 139114 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 139113 ATTCTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTTGCTAT 139054 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||| | | Sbjct 139053 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAACTT 138994 Query 241 CAAATTTCGA 250 |||||| ||| Sbjct 138993 CAAATTCCGA 138984 >seq1336 Length=104149 Score = 253 bits (280), Expect = 3e-65 Identities = 198/237 (84%), Gaps = 11/237 (5%) Strand=Plus/Minus Query 10 GAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCT 69 ||||||| ||| | | || ||||||| ||||||||||||| |||||||| |||||||| Sbjct 1781 GAATTACTATTACGAC-ACTATCATCAGGAGGGTAAAACTAAGCTGTCTCACGACGGTCT 1723 Query 70 AAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTT 129 ||||||||| || |||||||||| |||||||||||||||| | ||| ||||||||||| Sbjct 1722 AAACCCAGCCCAGGTTCCCTATTGGTGGGTGAACAATCCAGCACTTGATGAATTCTGCTT 1663 Query 130 CGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTG 189 | |||| ||||||||||||||| ||| ||||||||||||||||||||||||| | || Sbjct 1662 CACAATGACAGGAAGAGCCGACATTGAAAGATCAAAAAGCAACGTCGCTATGAATGTTTT 1603 Query 190 GCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct 1602 GCTGCCACAAGCCAGTTAT----------ACTTTTCTGACACCTCTAGCTTCAAATT 1556 >seq134 Length=619377 Score = 197 bits (218), Expect = 2e-48 Identities = 152/179 (85%), Gaps = 1/179 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | || |||| |||| | | || |||||||||||||||||||||| ||||||| Sbjct 237336 TACTAGGTTGACTTACTATTGTGAC-ACTGTCATCAGTAGGGTAAAACTAATTTGTCTCA 237394 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 || |||||||||||||||| ||||| |||| |||||| ||||||||||| ||| || Sbjct 237395 CGAAAGTCTAAACCCAGCTCATGTTCCATATTGGTGGGTCAACAATCCAACACTTGGTGA 237454 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||| |||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 237455 ATTCTTCTTCACAATGATAGGAAGAGCCGACATCGAATGATCAAAAAGCAACGTCGCTA 237513 >seq1431 Length=89469 Score = 129 bits (142), Expect = 1e-27 Identities = 88/98 (90%), Gaps = 1/98 (1%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 25263 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 25321 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGG 98 ||||||||||||||||||||||||||||||| ||||| Sbjct 25322 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGG 25359 >seq1060 Length=203652 Score = 114 bits (126), Expect = 2e-23 Identities = 92/110 (84%), Gaps = 7/110 (6%) Strand=Plus/Minus Query 185 GCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA 244 |||||||||||||||||||||||||| |||| ||||||||||| |||||||||| ||||| Sbjct 174538 GCTTGGCTGCCACAAGCCAGTTATCCATGTGTTAACTTTTCTGACACCTCTAGCTTCAAA 174479 Query 245 TTTCG-AGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || || ||| ||| |||| ||| ||| |||||| |||| |||||| Sbjct 174478 TTCCGAAGGTACT------TCGACAGGTCACGCTTTCACGGTTCGTATTC 174435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854165689344