Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq1943 178 3e-42 seq86 107 4e-21 seq678 91.5 3e-16 >seq1943 Length=39883 Score = 178 bits (196), Expect = 3e-42 Identities = 179/230 (78%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| |||||||||| ||||||||||| Sbjct 33338 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGGCCTCCCAAAAGGTAACGGAGGC 33397 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCAC-AGTGCAAAGGCAAAAGGGT 229 | ||||| | |||| | || ||| | || | | |||||||||||| ||||| Sbjct 33398 GTGCAAAGGTTTCCTCGGGCCAGACGGAGATTG-GCCCTCGAGTGCAAAGGCAGAAGGGA 33456 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | |||||||| | |||| | ||| |||||||||||||||||| |||| ||||||| ||| Sbjct 33457 GCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTCGGCCTTAGTGATCCGACGG 33516 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 ||| || ||||| ||||||||||| ||||||||||| ||| || |||||| Sbjct 33517 TGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACTCTAGGGATA 33566 >seq86 Length=657349 Score = 107 bits (118), Expect = 4e-21 Identities = 163/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Plus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 79300 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 79359 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 | | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 79360 TGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 79414 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 79415 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 79474 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 79475 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 79525 >seq678 Length=237146 Score = 91.5 bits (100), Expect = 3e-16 Identities = 131/185 (71%), Gaps = 5/185 (3%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGA-----GTAACG 165 |||||||| |||| | | |||| || ||| |||||| |||| |||||| Sbjct 32768 GGGACAGTCTCAGGTAGACGGTTTCTATGCGGCATAGGCCTCCTAAAGTAAAAGGTAACG 32827 Query 166 GAGGCGCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAA 225 |||||| |||| | |||||| || ||| | || |||||||||||| || Sbjct 32828 GAGGCGTGTAAAGGTTTCCTCAGGCCAGACGGAGATTGGCCGTCAAGTGCAAAGGCAGAA 32887 Query 226 GGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCG 285 ||| | |||||||| | |||| | ||| |||||||| ||||||||| |||| ||||||| Sbjct 32888 GGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGATGAAAGTCGGCCTTATTGATCCG 32947 Query 286 GCGGT 290 |||| Sbjct 32948 ACGGT 32952 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 982130586624