Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq86 107 2e-21 seq2412 102 9e-20 seq879 98.7 1e-18 seq736 98.7 1e-18 seq31 96.9 4e-18 seq280 89.7 6e-16 seq32 84.2 2e-14 >seq86 Length=657349 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Minus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 78743 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 78684 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 78683 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 78624 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 78623 GACAAGGAATTTCGCTACCTTAGGACAGTTA 78593 >seq2412 Length=28076 Score = 102 bits (112), Expect = 9e-20 Identities = 101/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGN 101 || |||| || |||||||||| || | | ||||||| ||| || | | ||||||| Sbjct 1146 GCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG-TCTCTCTCCGAGACAGT 1088 Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 ||| || ||||||| |||||||||||||||||||||||||||||||||| Sbjct 1087 GCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 1028 Query 162 TTAGGACCGTTA 173 |||||||||||| Sbjct 1027 TTAGGACCGTTA 1016 >seq879 Length=184597 Score = 98.7 bits (108), Expect = 1e-18 Identities = 111/150 (74%), Gaps = 2/150 (1%) Strand=Plus/Minus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||| || |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 114655 GGGTCATTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 114596 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 || | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 114595 -TCTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCG 114537 Query 144 ACAAGGAATTTCGCTACCTTAGGACCGTTA 173 ||||||||||||||||||||| |||||||| Sbjct 114536 ACAAGGAATTTCGCTACCTTAAGACCGTTA 114507 >seq736 Length=307973 Score = 98.7 bits (108), Expect = 1e-18 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || |||||||||| || | | ||||||||| | | || | ||||||| Sbjct 72754 GGTACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGA 72695 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||||||||||||| ||||| ||||||||||||| |||||||||| Sbjct 72694 CAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAG 72635 Query 166 GACCGTTA 173 ||| |||| Sbjct 72634 GACAGTTA 72627 >seq31 Length=1468034 Score = 96.9 bits (106), Expect = 4e-18 Identities = 58/61 (95%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 453561 TACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 453620 Query 173 A 173 | Sbjct 453621 A 453621 >seq280 Length=430711 Score = 89.7 bits (98), Expect = 6e-16 Identities = 98/132 (74%), Gaps = 2/132 (2%) Strand=Plus/Minus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGN 101 || |||| || |||||||||| || | | ||||||| ||| || | | ||||||| Sbjct 200083 GCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG-TCTCTCTCCGAGACAGT 200025 Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 ||| || ||||| | ||||||||||||||||||||||||||| ||||| Sbjct 200024 GCCCAAATCGTTACGCCTTTCGTTCGGGTCGGAACTTACCCGACAAGGAATTTTTCTACC 199965 Query 162 TTAGGACCGTTA 173 |||||||||||| Sbjct 199964 TTAGGACCGTTA 199953 >seq32 Length=1303039 Score = 84.2 bits (92), Expect = 2e-14 Identities = 46/46 (100%), Gaps = 0/46 (0%) Strand=Plus/Minus Query 128 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 454238 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 454193 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547054625376