Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq1943 226 6e-57 seq86 206 6e-51 seq72 86.0 1e-14 seq71 77.0 7e-12 >seq1943 Length=39883 Score = 226 bits (250), Expect = 6e-57 Identities = 238/309 (77%), Gaps = 18/309 (6%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||||||||||| || |||||||||||||||||| || |||||||||||||||||| Sbjct 27220 CACGCGGCATTG-CTCCGTCAGGCTTTCGCCCATTGCGGAAAATTCCCCACTGCTGCCTC 27162 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 |||||||||||||| || ||||||||| |||||||| |||||||||||||| |||||| | Sbjct 27161 CCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGATCATCCTCTCGGACCAGCT 27102 Query 149 ACGGATCGTCGCCTTGGTGAGCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCAT 208 || |||| | |||||||| ||| ||||||||||||||||||||||| ||| || | Sbjct 27101 ACTGATCATAGCCTTGGTAAGCTATTACCTCACCAACTAGCTAATCAGACGCGAGCCC-- 27044 Query 209 CTGATAGCGCAAGGCCCGAAGGTCCCCTGCTTTCTCCCGTAGGACGTATGCGGTATTAGC 268 || | | || || ||| ||||| | | | | | || | ||||||||| Sbjct 27043 CTCCTTGGGC----------GGATTCCTCCTTTCGCTCCTCAG-CCTACGGGGTATTAGC 26995 Query 269 GTCCGTTTCCGAACGTTATCCCCCACTACCA--GGCAGATTCCTAGGCATTACTCACCCG 326 |||||||| ||| ||||| || ||| ||||| ||| || || ||||||||||| Sbjct 26994 AGCCGTTTCCAGCTGTTGTCCCC--CTCCCAAGGGCAGGTTCTTACGCGTTACTCACCCG 26937 Query 327 TCCGCCGCT 335 |||||| || Sbjct 26936 TCCGCCACT 26928 >seq86 Length=657349 Score = 206 bits (228), Expect = 6e-51 Identities = 180/220 (82%), Gaps = 4/220 (2%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | ||||||| ||| |||||| |||| ||||||| ||||||||| Sbjct 56152 CTTTACAAGCGGCATTGCCCTTCTT-CACTCACGCGATATTG-CTGGATCGGGCTTTCGC 56095 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||||||||||||||| ||||| |||||| || |||||||||||| || Sbjct 56094 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCC 56035 Query 119 AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGAGCCATTACCT 178 |||||| |||||||||| ||||||| || | ||| | | |||||| |||| |||||| Sbjct 56034 AGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCT 55975 Query 179 CACCAACTAGCTAATCCGACCTAGGCTCATCTGATAGCGC 218 |||||||| ||||| | || ||||||||| | ||||| Sbjct 55974 GACCAACTACCTAATACTACGCAGGCTCATCAAACAGCGC 55935 >seq72 Length=237610 Score = 86.0 bits (94), Expect = 1e-14 Identities = 68/82 (83%), Gaps = 0/82 (0%) Strand=Plus/Plus Query 104 CCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTT 163 || ||||| ||| |||||||| ||||||||||||| |||||| ||| |||| |||||| Sbjct 113482 CCTTGTCTTAGTCCCAGTGTGGTTGATCATCCTCTCGGACCAGCTACTGATCATCGCCTC 113541 Query 164 GGTGAGCCATTACCTCACCAAC 185 || || |||||||||||||| Sbjct 113542 AGTAAGTTATTACCTCACCAAC 113563 >seq71 Length=852253 Score = 77.0 bits (84), Expect = 7e-12 Identities = 82/107 (77%), Gaps = 1/107 (1%) Strand=Plus/Plus Query 31 CGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCC 90 |||||||||| | ||| |||||| |||| || ||| ||||| || ||| || Sbjct 77808 CGCGGCATTGTTCCG-TCATGCTTTCATGTATTGCGGAAAATTTTCCACTACTACCTACC 77866 Query 91 GTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTC 137 ||||||| ||| || |||||||||| ||||||| |||||||||||| Sbjct 77867 ATAGGAGTTTGGGCCTTGTCTCAGTTTCAGTGTGGCTGATCATCCTC 77913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1071706014720