Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq3511 212 2e-52 seq86 141 3e-31 seq446 125 3e-26 seq735 100 1e-18 seq1124 89.7 2e-15 seq55 84.2 8e-14 >seq3511 Length=4520 Score = 212 bits (234), Expect = 2e-52 Identities = 288/399 (72%), Gaps = 36/399 (9%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | | ||| || |||| |||||| Sbjct 4147 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCAC 4206 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 4207 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 4266 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGT-CTTGATC-GTG 314 | ||| |||||| |||| |||||||||||||| | ||||||| | | | | ||| Sbjct 4267 TTCACCTAAGCTTCATCCTGGTCATGGATAGATCACCCAGGTTCGGGTCCATAAGCAGTG 4326 Query 315 CCACTCATACGCCCTATTCGGACTCGCTTTCGCTACGGCTAC--------CCCACACGGG 366 || ||| ||||||| |||||||||||||||||||| | ||| Sbjct 4327 ACA---ATA-GCCCTATGAAGACTCGCTTTCGCTACGGCTCCGGTGGTTTCCC------- 4375 Query 367 TTAACCTCGCGACACAACGCA-AACTCGCAGGCTCATTCTTCAAAAGGCACGCCGTCACC 425 |||||| || ||| | | | |||| |||||||||||||| |||||||| ||| Sbjct 4376 TTAACCAAGC--CACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTC--- 4430 Query 426 TGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACATGGTTTCAGGTACTATT 485 | || | | | |||| || | ||| || | ||||||| || ||||| Sbjct 4431 ---------AGAGCCCCAGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATT 4481 Query 486 TCACTCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACG 524 |||||||||||||||||| |||||||||||||||||||| Sbjct 4482 TCACTCCCCGCCAGGGGTTCTTTTCACCTTTCCCTCACG 4520 >seq86 Length=657349 Score = 141 bits (156), Expect = 3e-31 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 88 GGGCC-CCCTAGACCATCCAGTGCTCTACCTCCGGGAAGAAACACGCGACGCTGCACCTA 146 ||||| |||||| |||| ||||||||||||| || | ||| ||||| || | Sbjct 77330 GGGCCACCCTAGCCCATTGAGTGCTCTACCTCGGGCCATCGACATCATACGCTCTACTGA 77271 Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 ||| |||||| ||| |||||||||| | | ||| ||||||||||||||||| |||| Sbjct 77270 AATAGATTTCGCGGAAAACCAGCTATATCCGATCTTGGTTGGCCTTTCACCCCTAGCCAC 77211 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTA-CCCGC 265 | ||||||||| | ||| | || || ||||||||||||||||| | | ||| | | Sbjct 77210 AAGTCATCCCCGTATTTTGCCACATACGTGGGTTCGGTCCTCCAAGGCCTGTTAGAGCTC 77151 Query 266 GCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 ||||||||||| ||||| |||||| | | |||||||| Sbjct 77150 TCTTCAACCTGCTCATGGCTAGATCGATCGGTTTCGGGTC 77111 Score = 111 bits (122), Expect = 6e-22 Identities = 115/148 (78%), Gaps = 6/148 (4%) Strand=Plus/Minus Query 435 AAAGGCACTTCAGCTCC---GACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCAC 489 |||||| || |||||| ||| |||||| ||| | | |||||| || ||| ||| Sbjct 76969 AAAGGCTCTA-AGCTCCTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCAC 76911 Query 490 TCCCCGCCAGGGGTACTTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAA 549 |||| |||| |||||||||||||||||||||||||||| |||||||||||| | Sbjct 76910 TCCCTAAATAGGGTTCTTTTCACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGA 76851 Query 550 GGAGTATTTAGGCTTAACGGGTGGTCCC 577 ||| || ||||||||| |||||||||| Sbjct 76850 GGAATACTTAGGCTTAGAGGGTGGTCCC 76823 >seq446 Length=326244 Score = 125 bits (138), Expect = 3e-26 Identities = 129/169 (76%), Gaps = 0/169 (0%) Strand=Plus/Plus Query 137 GCTGCACCTAAATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCAC 196 ||||| ||| || |||||||||||||||||||||| | ||| || |||| ||| || Sbjct 320734 GCTGCGCCTCAACGCATTTCGGGGAGAACCAGCTAGCTTTGGGTTCGAGTGGCATTTAAC 320793 Query 197 CCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGT 256 | ||| ||||| |||||| || | |||||||| | ||| ||||||| ||||||| || Sbjct 320794 CGCTAACCACAACTCATCCGCTGATTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGT 320853 Query 257 CTTACCCGCGCTTCAACCTGCCCATGGATAGATCACTTCGCTTCGGGTC 305 | ||| |||||| | || |||||||||||||| | |||||||| Sbjct 320854 TTCACCTAAGCTTCATCATGGTCATGGATAGATCACCCAGGTTCGGGTC 320902 >seq735 Length=231921 Score = 100 bits (110), Expect = 1e-18 Identities = 102/132 (77%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 448 CTCCGACGGATTGTAGGCACATGGTTTCAGGTACT--ATTTCACTCCCCGCCAGGGGTAC 505 || |||| |||||| ||| | | |||||| || ||| ||||||| |||| | Sbjct 154264 CTTCGACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCCTAAATAGGGTTC 154323 Query 506 TTTTCACCTTTCCCTCACGGTACTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTA 565 ||||||||||||||||||||||||||| | |||||||||| || | || ||||||||| Sbjct 154324 TTTTCACCTTTCCCTCACGGTACTTGTACCCTATCGGTCATTGAGTAATACTTAGGCTTA 154383 Query 566 ACGGGTGGTCCC 577 |||||||||| Sbjct 154384 GAGGGTGGTCCC 154395 >seq1124 Length=135969 Score = 89.7 bits (98), Expect = 2e-15 Identities = 87/111 (78%), Gaps = 1/111 (1%) Strand=Plus/Plus Query 181 TTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTT 240 ||| ||||||||| ||||||| ||||| ||||||||| | ||| | || || ||||||| Sbjct 70787 TTGGTTGGCCTTTTACCCCTAGCCACAAGTCATCCCCGTATTTTGCCACATACGTGGGTT 70846 Query 241 CGGTCCTCCACGCGGTCTTACC-CGCGCTTCAACCTGCCCATGGATAGATC 290 | |||||||| | | ||| | | ||||||||||| ||||| |||||| Sbjct 70847 CAGTCCTCCAAGGCCTGTTAGAGCTCTCTTCAACCTGCTCATGGCTAGATC 70897 >seq55 Length=970253 Score = 84.2 bits (92), Expect = 8e-14 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 147 AATGCATTTCGGGGAGAACCAGCTATCACGAAGTTTGATTGGCCTTTCACCCCTATCCAC 206 || ||||||| |||||||||||||| | | ||| || |||| |||||| ||| |||| Sbjct 672021 AACGCATTTCAGGGAGAACCAGCTAGCTCTGGGTTCGAGTGGCATTTCACTGCTAACCAC 672080 Query 207 AGGTCATCCCCTCAGTTTTCAACCTAAGTGGGTTCGGTCCTCCACGCGGTCTTACC 262 | |||||| || | |||||||| | ||| ||||| | |||||| ||| | ||| Sbjct 672081 AACTCATCCGCTGATTTTTCAACATCAGTCGGTTCAGATCTCCACTTGGTTTCACC 672136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817101541376