Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq3511 170 5e-40 seq735 107 5e-21 seq86 102 2e-19 seq729 80.6 7e-13 seq1675 75.2 3e-11 seq6 73.4 1e-10 >seq3511 Length=4520 Score = 170 bits (188), Expect = 5e-40 Identities = 242/325 (74%), Gaps = 23/325 (7%) Strand=Plus/Plus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| |||| ||||| | ||||||||| ||||||||||| |||||| ||||| | Sbjct 4213 CCACAACTCAT-CCGCTGA-TTTTTCAACATCAGTCGGTTCGGACCTCCACTTAGTT-TC 4269 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 ||| || ||| || |||| ||| ||||||||| ||| | || |||||| || | || Sbjct 4270 ACCTAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATAAGC-AGT 4325 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGTTAAGCTT 186 ||| | | |||||| |||||||||||| ||||||| |||| | ||| |||| | Sbjct 4326 GACAATA-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGTTTCCCTTAACCAA 4383 Query 187 TGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCA----CCCAACA 242 ||||||| || |||||| | | |||| | ||| ||| |||| |||| |||| | Sbjct 4384 -GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAGAGCCCCAGCT 4442 Query 243 AAGTGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCG 302 ||||||||||||| || |||||||||| | ||||||||||||||| | | | Sbjct 4443 C------CTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCCGC-CAG 4495 Query 303 GGGTTCTTTTCGCCTTTCCCTCACG 327 ||||||||||| ||||||||||||| Sbjct 4496 GGGTTCTTTTCACCTTTCCCTCACG 4520 >seq735 Length=231921 Score = 107 bits (118), Expect = 5e-21 Identities = 103/130 (79%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 154269 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 154327 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | |||| || |||| ||| |||| Sbjct 154328 CACCTTTCCCTCACGGTACTTGTACCCTATCGGTCATTGAGTAATACTTAGGCTTAGAGG 154387 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 154388 GTGGTCCCCC 154397 >seq86 Length=657349 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 76949 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 76891 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 76890 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 76831 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 76830 GTGGTCCCCC 76821 >seq729 Length=44142 Score = 80.6 bits (88), Expect = 7e-13 Identities = 78/99 (79%), Gaps = 1/99 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||| |||||| || || |||||| | |||||||||||| || | | |||| Sbjct 30141 CTCCCATTGCTTGGTAGCTTATGGTTTCGTGTTCTATTTCACTCTCCGA-CGATGATTCT 30199 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCA 348 |||| |||||| |||| ||||||| |||||||||||||| Sbjct 30200 TTTCACCTTTCTCTCATGGTACTACTTCACTATCGGTCA 30238 >seq1675 Length=62474 Score = 75.2 bits (82), Expect = 3e-11 Identities = 75/96 (78%), Gaps = 1/96 (1%) Strand=Plus/Plus Query 281 ATCTATTTCACTCCCCTCTCCGGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACT 340 |||||||||||| ||| | | || |||||||| |||||| ||| | ||| || |||||| Sbjct 8457 ATCTATTTCACTGCCCGC-CAGGAATTCTTTTCACCTTTCTCTCGCAGTAGTACTTCACT 8515 Query 341 ATCGGTCAGTCAGTAGTATTTAGCCTTGGAGGATGG 376 |||| ||| | |||||||||||||| | | ||| Sbjct 8516 ATCGATCATCCGAGAGTATTTAGCCTTGCAAGGTGG 8551 >seq6 Length=1263909 Score = 73.4 bits (80), Expect = 1e-10 Identities = 117/165 (71%), Gaps = 11/165 (7%) Strand=Plus/Minus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGG--GTT 307 ||||||||| ||| || |||||||||| | |||||||||| | |||| || Sbjct 1120962 CTCCCACTGTTTGAGAGCTTACGGTTTCATG-----TTTCACTCCC--CGACGGGTTTTT 1120910 Query 308 CTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGT--CAGTAGTATTTAGCC 365 ||||| | |||| |||| | |||| |||||||||| ||| | || ||||||||||| Sbjct 1120909 TTTTTCACGTTTCTCTCATGAAACTACTTCACTATCGATCATTTCTAGGAGTATTTAGCC 1120850 Query 366 TTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCC 410 ||| | |||||| | ||||| || | || | ||||| || Sbjct 1120849 TTGCTAGGTGGTCCTTGCTGATTCACACGAGATTCCACGTGCCCC 1120805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241259503616