Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq2412 215 1e-53 seq86 167 5e-39 seq443 120 7e-25 seq26 118 2e-24 seq344 82.4 2e-13 >seq2412 Length=28076 Score = 215 bits (238), Expect = 1e-53 Identities = 302/411 (73%), Gaps = 21/411 (5%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 ||||||||||| ||||||| |||||| || ||||||||| | ||| ||| | | Sbjct 479 CGACTACGCCTTTCGGCCTGATCTTAGGCCCTGACTCACCCTCCGTGGACGAACCTAGCG 420 Query 61 CTGGAACCCTTGGATAATCGGCGGACGGGATTCCCACCCGTCACA-CGCTACTCATGCCT 119 ||||||||| | | |||| | | |||||| |||| | || |||||| ||| Sbjct 419 GAGGAACCCTTAGGTTTTCGGGGCATTGGATTCTCACCAATGTTTGCGTTACTCAAGCCG 360 Query 120 GCATTCTCACT--CGCATCAACTCCACCACACAG-TCACCCGGCAGCTTCACCACTGACA 176 ||||||| || ||| || |||| || | | || | ||| ||||| || | Sbjct 359 ACATTCTCGCTTCCGCTTCG--TCCA--ACCCTGCTCGCGCGGGTACTTCAGTTCTAAGG 304 Query 177 CG--ACGCTCCCCTACCCAACCAC----ACAGGTTGCCACAGCTTCGGCGGATAACTTAA 230 || ||||||||||||| | | ||| | ||||||||||||| ||| |||| Sbjct 303 CGGAACGCTCCCCTACCGATTTATTTTTACA---TCCCACAGCTTCGGCAGATCGCTTA- 248 Query 231 GCCCCGCTACATTATCGGCGCGGAATCACTTGACCAGTGAGCTATTACGCACTCTTTCAA 290 |||||| | ||| ||||||| | | || || ||||||||||||||||||||||| || Sbjct 247 GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCAGTGAGCTATTACGCACTCTTTGAA 189 Query 291 GGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTTTCCCAC 349 || |||||||||| | || |||||||||| ||||| ||| |||| || |||||| ||| Sbjct 188 GGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGTCTCTGCA-CTCCTACCTCCTTTATCAC 130 Query 350 TGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 |||| | || |||||||||||||||| ||||||||||||||||||||||| Sbjct 129 TGAGCGATCATTTAGGGGCCTTAGCTGGTGATCTGGGCTGTTTCCCTCTCG 79 >seq86 Length=657349 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 77607 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 77551 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 77550 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 77491 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 77490 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 77431 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 77430 GTTTCCCTCTCG 77419 >seq443 Length=327196 Score = 120 bits (132), Expect = 7e-25 Identities = 142/191 (74%), Gaps = 6/191 (3%) Strand=Plus/Minus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTG 269 |||||| | || |||| ||||| | |||||| || | || ||| || ||| |||| Sbjct 226397 CTTCGGTGAATCACTTGAGCCCTGATACATTTTCAGTGCCATGGAG---CTAGACTAGTG 226341 Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||||| ||||| |||| |||||||| ||||||||||| ||||| |||||||| ||| Sbjct 226340 AGCTACTACGCTTTCTTCAAAGGATGGATGCTTCCAAGCTCACCTCTTGGTTGTCATCGC 226281 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 ||| |||||| ||||| | | | |||||| |||||| | |||||||| || Sbjct 226280 TCGATCACTTCCTTTTCCACTAATTGATTGCTTAGGAACCTTAGTGTACGATCTGGGTTG 226221 Query 390 TTTCCCTCTCG 400 ||||||||||| Sbjct 226220 TTTCCCTCTCG 226210 Score = 118 bits (130), Expect = 2e-24 Identities = 142/189 (75%), Gaps = 8/189 (4%) Strand=Plus/Plus Query 213 CTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCA--CTTGACCAGTGA 270 |||| | | || | || ||||| | ||| || |||| || ||| || ||| ||| | Sbjct 225815 CTTCTGTGAATCATTTGAGCCCTGATACTTTTTCGGTGCC--ATCGAGCTAGACTAGTAA 225872 Query 271 GCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCA 330 |||||||||| |||| || ||||||| |||||||| ||||||||||||||| ||| Sbjct 225873 GCTATTACGCTTTCTTCAAATGATGGCT---TCCAAGCCCACCTCCTGGTTGTCTTCGCT 225929 Query 331 ACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGT 390 | ||| |||||| |||| ||| | || |||| ||||||| | |||||||||||| Sbjct 225930 CCATCACTTCCTTT-TCACTAAGTGATTGCTAAGGGACCTTAGCGTACGATCTGGGCTGT 225988 Query 391 TTCCCTCTC 399 ||||||||| Sbjct 225989 TTCCCTCTC 225997 >seq26 Length=132285 Score = 118 bits (130), Expect = 2e-24 Identities = 141/186 (76%), Gaps = 14/186 (8%) Strand=Plus/Plus Query 222 ATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGAGCTATTAC 278 || |||||||||| | |||||| |||| || ||| || ||||| ||||||||||| Sbjct 33158 ATCACTTAAGCCC-GATACATTTTCGGTGCCATGGAG---CTAGACCAATGAGCTATTAC 33213 Query 279 GCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTC---C 335 || | || ||||||||||||||||||||| ||||||| |||||| | | || | Sbjct 33214 GCTTTATTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTAGTTGTCATC---ATTCGATC 33270 Query 336 ACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGC-TGTTTCC 394 || |||| ||||| ||| | |||||| ||||||| | ||||||||| ||||||| Sbjct 33271 ACTCTCTTTTCCACTAAGTGATTGTTTAGGGACCTTAGCGTACGATCTGGGCTTGTTTCC 33330 Query 395 CTCTCG 400 |||||| Sbjct 33331 CTCTCG 33336 >seq344 Length=381323 Score = 82.4 bits (90), Expect = 2e-13 Identities = 90/117 (77%), Gaps = 2/117 (2%) Strand=Plus/Minus Query 285 TTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCAACTCC-ACATCCTT 343 ||| |||| |||||||||| | || |||||||||| || || ||| |||| || || || Sbjct 182748 TTTGAAGGGTGGCTGCTTCTAGGCAAACCTCCTGGCTGCCTTTGCA-CTCCTACCTCATT 182690 Query 344 TCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 | ||| || | || ||||||||||||||| | |||||| ||||| ||||||| Sbjct 182689 TATTACTAAGCGATCATTTAGGGGCCTTAGCTAGTAATCTGGATTGTTTGCCTCTCG 182633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1177277054976