Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq86 123 2e-26 seq1943 111 1e-22 seq1518 77.0 3e-12 >seq86 Length=657349 Score = 123 bits (136), Expect = 2e-26 Identities = 124/160 (78%), Gaps = 1/160 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 ||||||||||| |||||||| ||| | | ||||| || ||| ||||| ||| | | Sbjct 57415 CGAGTTGCAGAGAACAATCCGAACTGAGGCAATCTTTCCGG-ATTCGCTCCGCCTTACAG 57357 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCAT 121 | || ||| |||| | |||||||| ||||||| |||| |||||||||||||| Sbjct 57356 CCTTGCTTCCCATTGTAATTGCCATTGTAGCACGTGTGTGGCCCAGCCCATAAGGGCCAT 57297 Query 122 GAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||||||||||||||||||||||| || | |||| Sbjct 57296 GCGGACTTGACGTCATCCCCACCTTCCTCCAGTATCTCAC 57257 >seq1943 Length=39883 Score = 111 bits (122), Expect = 1e-22 Identities = 122/161 (76%), Gaps = 1/161 (1%) Strand=Plus/Minus Query 2 CGAGTTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGG 61 |||||||||| |||||||||| ||| | ||| || ||||||| ||||||||| Sbjct 28421 CGAGTTGCAGCCTACAATCCGAACTGAGGACGGGTTTTTGAAGTTAGCTCACCCTCGCGG 28362 Query 62 GTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCA-TAAGGGCCA 120 | | ||| ||| ||| |||||||| ||||||| |||| || |||||| || Sbjct 28361 GGTCGCGATCCTTTGTCCCGTCCATTGTAGCACGTGTGTCGCCCAGGGCAGTAAGGGGCA 28302 Query 121 TGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 ||| ||||||||||||||| ||||||||||||| || |||| Sbjct 28301 TGATGACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 28261 Score = 78.8 bits (86), Expect = 8e-13 Identities = 66/80 (83%), Gaps = 1/80 (1%) Strand=Plus/Minus Query 83 CCATTGTATGACGTGTGAAGCCCTACCCA-TAAGGGCCATGAGGACTTGACGTCATCCCC 141 |||||||| ||||||| |||| || |||||| ||||| ||||||||||||||| | Sbjct 28035 CCATTGTAGCACGTGTGTCGCCCAGGGCAGTAAGGGGCATGATGACTTGACGTCATCCTC 27976 Query 142 ACCTTCCTCCGGTTTGTCAC 161 |||||||||||| || |||| Sbjct 27975 ACCTTCCTCCGGCTTATCAC 27956 >seq1518 Length=78456 Score = 77.0 bits (84), Expect = 3e-12 Identities = 92/124 (74%), Gaps = 11/124 (9%) Strand=Plus/Plus Query 42 GGATTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAA 101 ||||| ||||| ||| | | | || ||| |||| | ||||||| ||||| Sbjct 60743 GGATTCGCTCCGCCTTACAGCCTTGCTTCCCATTGTAATTGCCATTGT-----GTGTG-- 60795 Query 102 GCCCTACCCATAA----GGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTG 157 |||| |||||||| |||||||| ||||||||||||||||||||||| |||| || | Sbjct 60796 GCCCAACCCATAATTAAGGGCCATGCGGACTTGACGTCATCCCCACCTTTCTCCAGTATC 60855 Query 158 TCAC 161 |||| Sbjct 60856 TCAC 60859 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415889481280