Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001844.1 Length=290 Score E Sequences producing significant alignments: (Bits) Value seq1943 154 2e-35 seq86 141 2e-31 seq1931 140 5e-31 seq215 91.5 2e-16 seq24 77.0 5e-12 >seq1943 Length=39883 Score = 154 bits (170), Expect = 2e-35 Identities = 201/278 (72%), Gaps = 0/278 (0%) Strand=Plus/Minus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| ||| ||||||| ||||||||| Sbjct 27561 GCTTTCGTCTCTCAGTGTCAGTATCGGCCCAGCAGAGCGCTTTCGCCATGGGTGTTCCTT 27502 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||||||||||| |||| ||| | |||||| |||| || | | |||| || Sbjct 27501 CCGATCTCTACGCATTTCATCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 27442 Query 126 AAAAACAGTTTCAAATGCAGGCTATGGGTTGAGCCCATAGTTTTCACATCTGACTTGCCT 185 | |||||| | | | ||||||||||| | ||| || | |||| Sbjct 27441 CTTAGTAGTTTCCACCACCTGTCCAGGGTTGAGCCCTGGGATTTGACGGCGAACTTAAAA 27382 Query 186 TCCCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTA 245 || |||||| | |||||| |||||| | |||||||||||||||| ||| || ||| Sbjct 27381 AGCCACCTACAGACGCTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTCTTA 27322 Query 246 CCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCC 283 |||||||||||||||| ||||||||| ||||||||| Sbjct 27321 CCGCGGCTGCTGGCACAGAGTTAGCCGATGCTTATTCC 27284 >seq86 Length=657349 Score = 141 bits (156), Expect = 2e-31 Identities = 207/290 (71%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 1 CCCACGCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGT 60 |||| |||||||| | ||||||| || |||| | | |||||||| ||| || Sbjct 56469 CCCATGCTTTCGCACTCCAGCGTCGGTAGGGACCCAGAGAGCTGCCTTCGCTTTTGGCGT 56410 Query 61 TCCTCCGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCAC 120 |||| |||| |||| || |||||||| ||||||||| |||||| | ||||| ||| Sbjct 56409 TCCTTCGTAGATCTGCGGATTTCACCCCTACACACGAAATTCCACTCTCCTCTGTCTCAC 56350 Query 121 TCAAGAAAAACAGTTTCAAATGCAGGCTATGGGTT----GAGCCCATAGTTTTCACATCT 176 ||||| || ||||| | ||| | | ||| | | | || ||||| | | Sbjct 56349 TCAAGTGAATTGGTTTCGAGAGCATTCCACCAGTTTTTGGCGACTTTAACTTTCA-ACCC 56291 Query 177 GACTTGCCTTC-CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCAC 235 || ||| |||||||| ||||||||| |||| | | |||| | ||| |||||| | Sbjct 56290 GA------TTCACCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCC 56237 Query 236 CTACGTATTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 | ||| |||||||||||||||||||| ||||||||| ||||| |||||| Sbjct 56236 CCCCGTCTTACCGCGGCTGCTGGCACGGAGTTAGCCGGGGCTTCTTCCTC 56187 >seq1931 Length=40595 Score = 140 bits (154), Expect = 5e-31 Identities = 205/288 (71%), Gaps = 8/288 (3%) Strand=Plus/Plus Query 8 TTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTCCG 67 ||||| ||||| |||||| | | ||| || ||| |||||||| ||||||||| Sbjct 9053 TTTCGTCTCTCAGTGTCAGTATCGGCCCAACAGAGCGCTTTCGCCACAGGTGTTCCTTTC 9112 Query 68 TATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAGAA 127 ||| ||||||||||||| |||| ||| | |||||| |||| || | | |||| || Sbjct 9113 TATCTCTACGCATTTCATCGCTCCACCAGAAATTCCCTCTGCCCCTACCGTACTCTAGCT 9172 Query 128 AAACAGTTTCAAATGCAGGCTATG---GGTTGAGCCCATAGTTTTCACATCTGACTTGCC 184 | |||||| | | |||| |||||||||| | ||| || | |||| Sbjct 9173 TAGTAGTTTCCACCAC---CTATCCATGGTTGAGCCCTGGGATTTTACGGCGAACTTAAA 9229 Query 185 TTCCCGCCTACA--CGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTA 242 || |||||| ||| ||||| |||||| | |||||||||||||||| ||| || Sbjct 9230 AAGCCACCTACATACGCTTTTTACGCCCAATCATTCCGGATAACGCTTGCATCCTCTGTC 9289 Query 243 TTACCGCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTCAGGTA 290 ||||||||| || |||||| ||||||||| ||||||||| ||| || Sbjct 9290 TTACCGCGGTTGTTGGCACAGAGTTAGCCGATGCTTATTCCCCAGATA 9337 >seq215 Length=206220 Score = 91.5 bits (100), Expect = 2e-16 Identities = 79/98 (81%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 188 CCGCCTACACGCCCTTTACACCCAATAAATCCGGATAACGCTTGCCACCTACGTATTACC 247 |||||||| ||||||||| |||| | | |||| | ||| |||||| || | | ||||| Sbjct 146126 CCGCCTACGTGCCCTTTACGCCCAGTCATTCCGAAGAACACTTGCCCCCCCCATCTTACC 146067 Query 248 GCGGCTGCTGGCACGTAGTTAGCCGTGGCTTATTCCTC 285 ||||||||| ||||| | ||||||| ||||| |||||| Sbjct 146066 GCGGCTGCTAGCACGGAATTAGCCGGGGCTTCTTCCTC 146029 >seq24 Length=780224 Score = 77.0 bits (84), Expect = 5e-12 Identities = 89/120 (74%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 6 GCTTTCGCGCCTCAGCGTCAGTTACTGTCCAGCAATCCGCCTTCGCCACTGGTGTTCCTC 65 ||||||| ||||| |||||| | | |||||| ||| ||||||| ||||||||| Sbjct 4585 GCTTTCGTCTCTCAGTGTCAGTATCGGCCCAGCAGAGCGCTTTCGCCATGGGTGTTCCTT 4644 Query 66 CGTATATCTACGCATTTCACCGCTACACACGGAATTCCGATTGCCTCTCCAGCACTCAAG 125 | || ||||||||||||| |||| ||| | |||||| |||| || | | |||| || Sbjct 4645 CCGATCTCTACGCATTTCATCGCTCCACCGGAAATTCCCTCTGCCCCTACCGTACTCTAG 4704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 828579812704