Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001884.1 Length=191 Score E Sequences producing significant alignments: (Bits) Value seq1431 118 1e-24 seq825 82.4 8e-14 >seq1431 Length=89469 Score = 118 bits (130), Expect = 1e-24 Identities = 137/181 (76%), Gaps = 3/181 (2%) Strand=Plus/Minus Query 11 CTTTTACTTTGAAAAAATTAGAGCGTTCAAAGCAGGCCTTTGCTC-GAATACATTACCAT 69 || |||||||||| ||||||||| | |||||||| |||| |||| | |||||||| ||| Sbjct 30017 CTGTTACTTTGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCAT 29958 Query 70 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGACCGCCCGTAATGA 129 || |||| | | |||| | | | ||||| ||| || | ||| || ||||||| Sbjct 29957 GGGATAACACCACAGGAT-TCTGATCCTATTGTGTTGGCCTTCGGGATCGGA-GTAATGA 29900 Query 130 TAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAAATTCTTGGATTTA 189 | || | ||| ||||||||| | ||||| || |||| |||||||||||||||||||| Sbjct 29899 TTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAATTCTTGGATTTA 29840 Query 190 T 190 | Sbjct 29839 T 29839 >seq825 Length=207429 Score = 82.4 bits (90), Expect = 8e-14 Identities = 100/134 (75%), Gaps = 2/134 (1%) Strand=Plus/Plus Query 57 AATACATTACCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTAGGTTTCTAGGA 116 |||| |||| |||| |||| | | |||| | | | ||||| ||| || | |||| Sbjct 115253 AATATATTAGTATGGCATAACACTACAGGAT-TCTGATCCTATTGTGTTGGCCTTCAGGA 115311 Query 117 CCGCCCGTAATGATAAATACGGATAGTCGGGGGTGTCAGTATTCAATTGTCAAAGGTGAA 176 || |||||||| |||| ||| | |||||||| | ||||| || |||||||||||| Sbjct 115312 TCGGA-GTAATGATTAATAGGGACAATCGGGGGTATTCGTATTTCATAGTCAAAGGTGAA 115370 Query 177 ATTCTTGGATTTAT 190 |||||||||||||| Sbjct 115371 ATTCTTGGATTTAT 115384 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511863976960