Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01001962.1 Length=275 Score E Sequences producing significant alignments: (Bits) Value seq1943 259 8e-67 seq86 196 8e-48 seq735 158 2e-36 seq1041 154 2e-35 seq443 140 5e-31 seq324 107 3e-21 seq1717 86.0 1e-14 seq385 82.4 1e-13 >seq1943 Length=39883 Score = 259 bits (286), Expect = 8e-67 Identities = 222/273 (81%), Gaps = 1/273 (0%) Strand=Plus/Minus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| |||||| |||||| ||| |||| ||| |||||| Sbjct 33889 GGTGGGCTTACTACTTAGATGCTTTCAGCAGTTATCCGCTCCGCACTTGGCTACCCAGCG 33830 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||||| | |||||| |||||||||| |||| |||||||||||||||||| Sbjct 33829 TTTACCGTTGGCACGATAACTGGCACACCAGAGGTGCGTCCTTCCCGGTCCTCTCGTACT 33770 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || ||||||||| || |||||| | |||||| ||||||||||||||| || Sbjct 33769 AGGGAAAGGTCCTCTCAATGCTCTAACGCCCCCACCGGATATGGACCGAACTGTCTCACG 33710 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 |||||||||||||||||| ||| || ||||||||||||||||||||||||||||| |||| Sbjct 33709 ACGTTCTGAACCCAGCTCACGTACCGCTTTAATGGGCGAACAGCCCAACCCTTGGAACCT 33650 Query 243 ACTTCAGCCCCAGGATGAGACGAGCCGACATCG 275 || |||| ||||| | || |||||||||||| Sbjct 33649 GCTACAGCTCCAGGTGGCGAAGAGCCGACATCG 33617 >seq86 Length=657349 Score = 196 bits (216), Expect = 8e-48 Identities = 194/251 (77%), Gaps = 4/251 (2%) Strand=Plus/Minus Query 29 CAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGCTATGCACTTGGCAGTACAACTGGTGC 88 |||| || | || | | |||||||| ||| || ||| |||||| ||||| ||| | Sbjct 79826 CAGCAGTTCTTCCATACCAACTTAGCAGCCCGGCGCTGCTATTGGCATAACAACCGGTAC 79767 Query 89 ACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACAGCTCCTCTCAAATTTCCT- 147 |||| ||||| | ||| ||| |||||||||||||| || ||||||| || | ||| Sbjct 79766 ACCATAGGTTGGCCCAACCCAGTCCTCTCGTACTAGGGCTGGCTCCTCGCAGTTCTCCCT 79707 Query 148 ---ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGT 204 || || ||| |||||| ||||||||||||| ||||||||| |||||| ||| ||| Sbjct 79706 TTAACACCAACGGTAGATAGGAACCGAACTGTCTCACGACGTTCTAAACCCAACTCACGT 79647 Query 205 GCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACG 264 || ||| ||| |||||||| || |||||||||||||| ||||| |||||||||| || | Sbjct 79646 ACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCTTCAACCCCAGGATGTGATG 79587 Query 265 AGCCGACATCG 275 || |||||||| Sbjct 79586 AGTCGACATCG 79576 >seq735 Length=231921 Score = 158 bits (174), Expect = 2e-36 Identities = 155/197 (79%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 70 TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA 129 |||||| ||||| ||| ||| | ||||| | ||| ||| |||||||||||||| || | Sbjct 152714 TTGGCATAACAACCGGTACAC-ATAGGTTGGCCCAACCCAGTCCTCTCGTACTACGGCTA 152772 Query 130 GCTCCTCTCAAATTTCCT----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACG 185 ||||||| || | ||| || || ||| | ||||| || |||||||||| ||||| Sbjct 152773 GCTCCTCGCAGTTCTCCCTTTAACACCAACGTAG-ATAGGAACTGAACTGTCTCACGACG 152831 Query 186 TTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACT 245 |||| |||||| ||| ||| || ||| ||| |||||||| || |||||||||||||| || Sbjct 152832 TTCTAAACCCAACTCACGTACCACTTGAATCGGCGAACAACCGAACCCTTGGGACCTTCT 152891 Query 246 TCAGCCCCAGGATGAGA 262 ||| |||||||||| || Sbjct 152892 TCAACCCCAGGATGTGA 152908 >seq1041 Length=132201 Score = 154 bits (170), Expect = 2e-35 Identities = 188/254 (74%), Gaps = 2/254 (1%) Strand=Plus/Plus Query 4 GGAGGGCTTCGGGCTTAGATGCCTTCAGCTCTTATCCCTTCCAAACTTAGCTTCCCAGC- 62 || |||||| ||||||||| || ||| |||| | || | |||| || || ||| Sbjct 106490 GGTGGGCTTACTACTTAGATGCTTTGAGCAGTTATTCGTTTCGCACTTGACTACC-AGCA 106548 Query 63 TATGCACTTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACT 122 | | | |||||| | |||||| ||||| |||| |||| | | |||||||||||| | Sbjct 106549 TTTACCGTTGGCACGATAACTGGCACACCAAAGGTCCGTCCTTTCTGGTCCTCTCGTAAT 106608 Query 123 AAGGACAGCTCCTCTCAAATTTCCTACGCCCACGACGGATAGGGACCGAACTGTCTCGCG 182 | ||| || |||||| || || || ||| | | ||| ||||||||||||||| || Sbjct 106609 AGGGAAAGGTCCTCTTAATGCTCTAACACCCCCATCAAATATGGACCGAACTGTCTCACG 106668 Query 183 ACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCT 242 | ||||||||| || | | | || |||||||||||||||| |||||||||||| |||| Sbjct 106669 ATGTTCTGAACTTGGCGCACATACCGCTTTAATGGGCGAACAACCCAACCCTTGGAACCT 106728 Query 243 ACTTCAGCCCCAGG 256 | | |||| ||||| Sbjct 106729 ATTACAGCTCCAGG 106742 >seq443 Length=327196 Score = 140 bits (154), Expect = 5e-31 Identities = 157/210 (75%), Gaps = 4/210 (2%) Strand=Plus/Minus Query 70 TTGGCAGTACAACTGGTGCACCAGAGGTTTGTCCATCCCGGTCCTCTCGTACTAAGGACA 129 |||||| ||||| ||| ||||| ||||| | ||| | | ||||||||||||| || Sbjct 227990 TTGGCATAACAACCGGTACACCATAGGTTGGCCCAACACATTCCTCTCGTACTAGGGTTG 227931 Query 130 GCTCCTCTCAAATTTCCT----ACGCCCACGACGGATAGGGACCGAACTGTCTCGCGACG 185 ||||||| || | ||| || || ||| |||| ||||||||||||| |||| Sbjct 227930 GCTCCTCGCAGTTCTCCCTTTAACACCAACGGTAGATACAAACCGAACTGTCTCACGACC 227871 Query 186 TTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACT 245 |||| |||||| ||| || | ||| ||| | |||||| || |||||||||||||| || Sbjct 227870 TTCTAAACCCAACTCATGTAACACTTGAATCGACGAACAACCGAACCCTTGGGACCTTCT 227811 Query 246 TCAGCCCCAGGATGAGACGAGCCGACATCG 275 ||| || ||||||| || ||| | |||||| Sbjct 227810 TCAACCACAGGATGTGATGAGTCTACATCG 227781 >seq324 Length=395119 Score = 107 bits (118), Expect = 3e-21 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 158 CGGATAGGGACCGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGG 217 || ||| | ||| ||||||||| |||| |||||||| |||||| || || ||| | ||| Sbjct 240890 CGAATATGAACCAAACTGTCTCACGACATTCTGAACTCAGCTCATGTACCGCTTAAGTGG 240831 Query 218 GCGAACAGCCCAACCCTTGGGACCTACTTCAGCCCCAGGATGAGACGAGCCGACATC 274 |||||||||||||||||||| || |||| || | |||| | || ||||||||||| Sbjct 240830 GCGAACAGCCCAACCCTTGGAACATACTACAACTACAGGTGGGGAAGAGCCGACATC 240774 >seq1717 Length=58280 Score = 86.0 bits (94), Expect = 1e-14 Identities = 70/85 (82%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 191 AACCCAGCTCGCGTGCCTCTTTAATGGGCGAACAGCCCAACCCTTGGGACCTACTTCAGC 250 |||||||||| | | || |||||||||||||||| ||||||||||| ||||||| |||| Sbjct 41510 AACCCAGCTCACATACCGCTTTAATGGGCGAACAACCCAACCCTTGTAACCTACTACAGC 41451 Query 251 CCCAGGATGAGACGAGCCGACATCG 275 ||||| | | |||| ||||||| Sbjct 41450 TCCAGGTGGCAAAGAGCTGACATCG 41426 >seq385 Length=263307 Score = 82.4 bits (90), Expect = 1e-13 Identities = 70/85 (82%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 162 TAGGGAC-CGAACTGTCTCGCGACGTTCTGAACCCAGCTCGCGTGCCTCTTTAATGGGCG 220 ||||| | ||||||||| | | |||| |||||||| ||| ||| || |||||||||||| Sbjct 148034 TAGGGTCTCGAACTGTCACTCATCGTTATGAACCCAACTCACGTACCGCTTTAATGGGCG 148093 Query 221 AACAGCCCAACCCTTGGGACCTACT 245 |||| | ||| |||||| ||||||| Sbjct 148094 AACAACTCAATCCTTGGAACCTACT 148118 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 780592564864