Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1943 255 1e-65 seq86 170 5e-40 seq71 84.2 5e-14 >seq1943 Length=39883 Score = 255 bits (282), Expect = 1e-65 Identities = 300/404 (74%), Gaps = 30/404 (7%) Strand=Plus/Minus Query 11 ACCCGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAA 70 ||||| ||||||| | | | |||||||||| ||| | |||||||| ||||||||| | || Sbjct 27240 ACCCGTAGGCCTTTTACCTCCACGCGGCATTGCTCCGTCAGGCTTTCGCCCATTGCGGAA 27181 Query 71 TATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGG 130 |||||||||||||||||||||||||||||||| || ||||||||| |||||||||||| Sbjct 27180 AATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCTTGTCTCAGTCCCAGTGTGGCTGA 27121 Query 131 TCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACTAGC 190 |||||||||| ||||||||| |||| | |||| ||| || |||||| | ||||||||| Sbjct 27120 TCATCCTCTCGGACCAGCTACTGATCATAGCCTTGGTAAGCTATTACCTCACCAACTAGC 27061 Query 191 TAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCTTGC 250 ||||| | | | | ||| || | || ||| ||| || | || | Sbjct 27060 TAATCAGACGCGAGCCCCTCC----TTGGGCGG------ATTCCTCCT-TTCGCTCCTCA 27012 Query 251 GACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCC 310 | | || | ||||||||| |||||||||| ||| ||||||||| ||||| ||| Sbjct 27011 GCC--TACGGGGTATTAGCAGCCGTTTCCAGCTGTTGTCCCCCTCCCAAGGGCAGGTTCT 26954 Query 311 CAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCG 370 | | |||||||||||||||||||| ||| || || |||| ||| Sbjct 26953 TACGCGTTACTCACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCG 26911 Query 371 TTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 | |||||||||||||| | || ||||||||||||||| ||||| Sbjct 26910 TCCGACTTGCATGTGTAAAGCATGCCGCCAGCGTTCATCCTGAG 26867 >seq86 Length=657349 Score = 170 bits (188), Expect = 5e-40 Identities = 154/193 (80%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 4 CTTTACAACCCGAA--GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | | ||||||||| |||||| || |||| ||| ||||| ||||| Sbjct 56152 CTTTACAAGCGGCATTGCCCTTCTTCACTCACGCGATATTGCTGGATCGGGCTTTCGCCC 56093 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||||||||||||||| ||||| |||||| || |||||||||||| |||| Sbjct 56092 ATTGTCCAAGATTCCCCACTGCTGCCCCCCGTGGGAGTCCGGGCCGTGTCTCAGTCCCAG 56033 Query 122 TGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCG 181 |||||||| |||||| |||||||||| | ||| | | || ||| ||| ||||| Sbjct 56032 TGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCATTGGCTTGGTCAGCCTTTACCTGA 55973 Query 182 CCAACTAGCTAAT 194 ||||||| ||||| Sbjct 55972 CCAACTACCTAAT 55960 >seq71 Length=852253 Score = 84.2 bits (92), Expect = 5e-14 Identities = 82/106 (77%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 33 CGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCACTGCTGCCTCCCG 92 |||||||| | | | ||| |||| | |||| | || ||| ||||| || ||| || Sbjct 77808 CGCGGCATTGTTCCGTCATGCTTTCATGTATTGCGGAAAATTTTCCACTACTACCTACCA 77867 Query 93 TAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCTC 138 ||||||| ||| || |||||||||| ||||||||||| |||||||| Sbjct 77868 TAGGAGTTTGGGCCTTGTCTCAGTTTCAGTGTGGCTGATCATCCTC 77913 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222064769024