Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01002180.1 Length=500 Score E Sequences producing significant alignments: (Bits) Value seq1943 309 9e-82 seq86 269 8e-70 seq205 129 2e-27 seq215 111 5e-22 seq1931 104 7e-20 seq71 80.6 8e-13 >seq1943 Length=39883 Score = 309 bits (342), Expect = 9e-82 Identities = 276/342 (81%), Gaps = 3/342 (1%) Strand=Plus/Plus Query 160 CGCGTCTGATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGAC 219 |||||||||||||||||||||| |||||| |||||||||||| | |||||||||| | Sbjct 27049 CGCGTCTGATTAGCTAGTTGGTGAGGTAATAGCTTACCAAGGCTATGATCAGTAGCTGGT 27108 Query 220 CTGAGAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAG 279 | |||||| ||||| |||||| ||| ||||||||| || ||| ||||||||||||||||| Sbjct 27109 CCGAGAGGATGATCAGCCACACTGGGACTGAGACAAGGCCCAGACTCCTACGGGAGGCAG 27168 Query 280 CAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGA 339 ||||||||||| || | |||||||| ||||||||| | ||||| |||||||| | | Sbjct 27169 CAGTGGGGAATTTTCCGCAATGGGCGAAAGCCTGACGGAGCAATGCCGCGTGGAGGTAAA 27228 Query 340 AGGCCTTCGGGTCGTAAAGCTC-TGTCCTCAAGGA-AGATAATGACGGTACTTGAGGAGG 397 |||||| |||||| | || || | |||| || | | | |||||||||| | ||| Sbjct 27229 AGGCCTACGGGTCATGAACTTCTTTTCCTGGAGAAGAAACAATGACGGTATCCGGGGAAT 27288 Query 398 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 457 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 27289 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 27348 Query 458 GAATTACTGGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGT 499 |||| | | |||||||||| || |||||||| || |||||| Sbjct 27349 GAATGA-TTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGT 27389 >seq86 Length=657349 Score = 269 bits (298), Expect = 8e-70 Identities = 258/327 (79%), Gaps = 5/327 (2%) Strand=Plus/Plus Query 168 ATTAGCTAGTTGGTAAGGTAACGGCTTACCAAGGCGACGATCAGTAGCCGACCTGAGAGG 227 ||||| |||||||| |||||| |||| |||||| | | ||| |||| | || || Sbjct 55960 ATTAGGTAGTTGGTCAGGTAAAGGCTGACCAAGCCAATGATGCTTAGCTGGTCTTTTCGG 56019 Query 228 GTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGTGGGG 287 ||||| |||||| ||| |||||||||||| || ||||| ||||| ||||||||||||| Sbjct 56020 ATGATCAGCCACACTGGGACTGAGACACGGCCCGGACTCCCACGGGGGGCAGCAGTGGGG 56079 Query 288 AATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGAGCGATGAAGGCC--T 345 ||| ||| ||||||||| |||||| ||| |||||| |||||||| || ||||| | | Sbjct 56080 AATCTTGGACAATGGGCGAAAGCCCGATCCAGCAATATCGCGTGAGTGAAGAAGGGCAAT 56139 Query 346 TCGGGTCGTAAAGCTCTGTCCTCAA--GGAAGATAATGACGGTACTTGAGGAGGAAGCCC 403 | | | |||||||||| || || | | ||| ||||| | ||| ||||| ||||||| Sbjct 56140 GCCGCTTGTAAAGCTCTTTCGTCGAGTGCGCGATCATGACAGGACTCGAGGAAGAAGCCC 56199 Query 404 CGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCGGAATTA 463 ||||||||| |||||||||||||||||||| ||| |||||| || ||| | |||||| | Sbjct 56200 CGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGA 56259 Query 464 CTGGGGCGTAAAGGGTGCGTAGGTGGT 490 || |||||||||||| |||||| ||| Sbjct 56260 CT-GGGCGTAAAGGGCACGTAGGCGGT 56285 >seq205 Length=211261 Score = 129 bits (142), Expect = 2e-27 Identities = 173/233 (74%), Gaps = 12/233 (5%) Strand=Plus/Plus Query 259 CCAAACTCCTACGGGAGGCAGCAGTGGGGAATATTGCACAATGGGCAAAAGCCTGATGCA 318 || |||||| ||| | | ||||||||||||| ||| |||||||||||||| | ||| | Sbjct 117372 CCGAACTCCCACGAG-GATAGCAGTGGGGAATCTTGGACAATGGGCAAAAGTCCGATCTA 117430 Query 319 GCAACGCCGCGTGAGCGATGAAGGCCTTCGGGTC----GTAAAGCTCTGTCCTCAA--GG 372 |||| | |||||| || ||||| | | ||| |||||||||| || || | | Sbjct 117431 GCAATATCACGTGAGTGAAGAAGGGC--AGTGTCACTTGTAAAGCTCTTTCGTCGAGTGC 117488 Query 373 AAGATAATGACGGTACTTGAGGAGGAAG-CCCCGGCTAACTACGTGCCAGCAGCCGCGGT 431 ||| |||| | ||| ||||| |||| ||||| |||||| ||||||| || ||||||| Sbjct 117489 GCGATCATGATAGGACTCGAGGAAGAAGCCCCCGACTAACTCCGTGCCAACAACCGCGGT 117548 Query 432 AATACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTA 484 || | | |||||| || ||| | ||| || | | |||||||||||| |||| Sbjct 117549 AAGAGGGAGGGGG-GAGTGTTCTTCGGTATGA-TTGGGCGTAAAGGGCACGTA 117599 >seq215 Length=206220 Score = 111 bits (122), Expect = 5e-22 Identities = 95/116 (82%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 375 GATAATGACGGTACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAAT 434 ||| ||||| | ||| ||||| |||||||||||||| | ||||| |||||||||||||| Sbjct 146013 GATCATGACAGGACTCGAGGAAGAAGCCCCGGCTAATTCCGTGCTAGCAGCCGCGGTAAG 146072 Query 435 ACGTAGGGGGCTAGCGTTATCCGGAATTACTGGGGCGTAAAGGGTGCGTAGGTGGT 490 | | |||||| || ||| | |||||| ||| |||||||||||| |||||| ||| Sbjct 146073 ATGGGGGGGGCAAGTGTTCTTCGGAATGACT-GGGCGTAAAGGGCACGTAGGCGGT 146127 >seq1931 Length=40595 Score = 104 bits (114), Expect = 7e-20 Identities = 125/165 (76%), Gaps = 5/165 (3%) Strand=Plus/Minus Query 339 AAGGCCTTCGGGTCGTAAAGCTCTGT-CCTCAAGGA-AGATAATGACGGTACTTGAGGAG 396 ||||||| |||||| | || ||| | ||| || | | | |||||||||| || ||| Sbjct 9386 AAGGCCTACGGGTCATGAACTTCTTTTCCTGGAGAAGAAACAATGACGGTATCTGGGGAA 9327 Query 397 GAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCC 456 |||| ||||||||| |||||| || ||||||||| || ||| || |||||||||| Sbjct 9326 TAAGCATCGGCTAACTCTGTGCCAACAACCGCGGTAAGACAGAGGATGCAAGCGTTATCC 9267 Query 457 GGAATTACTGGGGCGT--AAAGGGTGCGTAGGTGGTTTCTTAAGT 499 ||||| | | |||||| |||| || |||||||| || |||||| Sbjct 9266 GGAATGA-TTGGGCGTAAAAAGCGTATGTAGGTGGCTTTTTAAGT 9223 >seq71 Length=852253 Score = 80.6 bits (88), Expect = 8e-13 Identities = 83/109 (76%), Gaps = 0/109 (0%) Strand=Plus/Minus Query 224 GAGGGTGATCGGCCACATTGGAACTGAGACACGGTCCAAACTCCTACGGGAGGCAGCAGT 283 |||| ||||| |||||| || |||||||||| || ||||||||||| || ||| || ||| Sbjct 77913 GAGGATGATCAGCCACACTGAAACTGAGACAAGGCCCAAACTCCTATGGTAGGTAGTAGT 77854 Query 284 GGGGAATATTGCACAATGGGCAAAAGCCTGATGCAGCAACGCCGCGTGA 332 || ||| || | |||| ||||| ||| | | ||| |||||| || Sbjct 77853 GGAAAATTTTCCGCAATACATGAAAGCATGACGGAACAATGCCGCGAGA 77805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1497189298176