Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01002183.1 Length=408 Score E Sequences producing significant alignments: (Bits) Value seq1943 275 2e-71 seq1931 228 2e-57 seq86 212 2e-52 seq24 163 7e-38 seq215 109 1e-21 seq213 86.0 2e-14 seq205 80.6 6e-13 seq527 73.4 1e-10 >seq1943 Length=39883 Score = 275 bits (304), Expect = 2e-71 Identities = 302/398 (76%), Gaps = 3/398 (1%) Strand=Plus/Plus Query 13 AAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGCGTTATCCG 72 |||| ||||||||| ||||||||||||||||||| || ||| || ||||||||||| Sbjct 27289 AAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCG 27348 Query 73 GAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGAAAGGCTATGG 132 |||| | ||||||||||| || |||||||| || |||||| | || ||| | | || Sbjct 27349 GAATGATTGGGCGTAAAGCGTCTGTAGGTGGCTTTTTAAGTTCGCCGTCAAATCCCAGGG 27408 Query 133 CTCAACCCCGGGACTGCT-TTTGAAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGGAA 191 ||||| ||| |||| | | | |||||| | |||||||| | | ||||||| |||| Sbjct 27409 CTCAA-CCCTGGACAGGTGGTGGAAACTACTAAGCTAGAGTACGGTAGGGGCAGAGGGAA 27467 Query 192 TTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGGCT 251 || | ||| |||| ||||||||||||| || | ||||||||| ||||||| ||| Sbjct 27468 TTTCCGGTGGAGCGATGAAATGCGTAGAGATCGGAAGGAACACCCATGGCGAAAGCGCTC 27527 Query 252 TGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACC 311 |||||| | | |||||||||||| ||||||| |||||||||| |||||||| ||| Sbjct 27528 TGCTGGGCCGATACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGACC 27587 Query 312 CTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT-AAGTGCTCCGGT 370 | ||||||| ||||||||||||| |||||| ||| | | ||| || | | | | Sbjct 27588 CCAGTAGTCCTAGCCGTAAACGATGGATACTAAGTGGCTGTGCGTATCCACCCGTGCAAT 27647 Query 371 GCCGCAGCAAACGCAATAAGTATTCCACCTGGGGAGTA 408 || | ||| ||||| ||||||| || ||||||||||| Sbjct 27648 GCTGTAGCTAACGCGTTAAGTATCCCGCCTGGGGAGTA 27685 >seq1931 Length=40595 Score = 228 bits (252), Expect = 2e-57 Identities = 258/345 (75%), Gaps = 2/345 (1%) Strand=Plus/Minus Query 5 TGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCTAGC 64 || ||| |||| ||||||||| |||||| || ||||||||| || ||| || ||| Sbjct 9333 TGGGGAATAAGCATCGGCTAACTCTGTGCCAACAACCGCGGTAAGACAGAGGATGCAAGC 9274 Query 65 GTTATCCGGAATTACTGGGCGTAAA--GGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTGA 122 |||||||||||| | |||||||||| | || |||||||| || |||||| | || | Sbjct 9273 GTTATCCGGAATGATTGGGCGTAAAAAGCGTATGTAGGTGGCTTTTTAAGTTCGCCGTAA 9214 Query 123 AAGGCTATGGCTCAACCCCGGGACTGCTTTTGAAACTGCAGGGCTAGAGTGCAGGAGGGG 182 || | | ||||||||| || | | |||||| | |||||||| | | ||||| Sbjct 9213 AATCCCAGGGCTCAACCATGGATAGGTGGTGGAAACTACTAAGCTAGAGTACGGTAGGGG 9154 Query 183 CAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCG 242 || |||||| || ||| |||| ||||||||||||| || ||||||||| |||||| Sbjct 9153 CAGAGGGAATTTCTGGTGGAGCGATGAAATGCGTAGAGATAGAAAGGAACACCTGTGGCG 9094 Query 243 AAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGA 302 || ||| || ||| | | |||||||||||| ||||| | |||||||||| ||| Sbjct 9093 AAAGCGCTCTGTTGGGCCGATACTGACACTGAGAGACGAAATCTAGGGGAGCAAATGGGA 9034 Query 303 TTAGATACCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTG 347 ||||| |||| ||||||| ||||||||||||| |||||| ||| Sbjct 9033 TTAGAGACCCCAGTAGTCCTAGCCGTAAACGATGGATACTAAGTG 8989 >seq86 Length=657349 Score = 212 bits (234), Expect = 2e-52 Identities = 253/340 (74%), Gaps = 10/340 (3%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||||| |||||||||||||||||||| ||| |||||| Sbjct 56183 ACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCA 56242 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGTTTCTTAAGTCAGAGGTG 121 || ||| | |||||| ||||||||||||||| |||||| ||| | || | || Sbjct 56243 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGTGAATCGGGTTGAAAGTT 56302 Query 122 AAAGGCTATGGCTCAACCCCG-GGACTGCTTTTGAAAC---TGCAGGGCTAGAGTGCAGG 177 |||| | | | || | | ||| |||| | ||||| | || || ||||| Sbjct 56303 AAAGTC---GCCAAAAACTGGTGGAATGCTCTCGAAACCAATTCA---CTTGAGTGAGAC 56356 Query 178 AGGGGCAAGTGGAATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAG 237 || || ||||||||| | |||||| |||||||| || |||| | | |||||| ||| Sbjct 56357 AGAGGAGAGTGGAATTTCGTGTGTAGGGGTGAAATCCGCAGATCTACGAAGGAACGCCAA 56416 Query 238 TGGCGAAGGCGGCTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAA 297 |||||||| ||| |||| || ||| ||| | ||||||| |||||||| || Sbjct 56417 AAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGAGTGCGAAAGCATGGGGAGCGAA 56476 Query 298 CAGGATTAGATACCCTGGTAGTCCACGCCGTAAACGATGA 337 | ||||||||||||||||||||||| |||||||||||||| Sbjct 56477 CGGGATTAGATACCCTGGTAGTCCATGCCGTAAACGATGA 56516 >seq24 Length=780224 Score = 163 bits (180), Expect = 7e-38 Identities = 175/229 (76%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 131 GGCTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 |||||||||| || || | | || ||||| | |||||||| | | ||||||| || Sbjct 4739 GGCTCAACCCTGG-ACAGGTGGTGGAAACTACTAAGCTAGAGTACGGTAGGGGCAGAGGG 4681 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||| | ||| |||| ||||||||||||| || | ||||||||| ||||||| ||| Sbjct 4680 AATTTCCGGTGGAGCGATGAAATGCGTAGAGATCGGAAGGAACACCCATGGCGAAAGCGC 4621 Query 250 CTTGCTGGACTGTAACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATA 309 |||||| | | |||||||||||| ||||||| |||||||||| |||||||| | Sbjct 4620 TCTGCTGGGCCGATACTGACACTGAGAGACGAAAGCTAGGGGAGCAAATGGGATTAGAGA 4561 Query 310 CCCTGGTAGTCCACGCCGTAAACGATGAATACTAGGTGTCGGGGCGCAT 358 ||| ||||||| ||||||||||||| |||||| ||| | | ||| || Sbjct 4560 CCCCAGTAGTCCTAGCCGTAAACGATGGATACTAAGTGGCTGTGCGTAT 4512 >seq215 Length=206220 Score = 109 bits (120), Expect = 1e-21 Identities = 86/103 (83%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCT 61 ||| ||||| |||||||||||||| | ||||| |||||||||||||| | | |||||| Sbjct 146025 ACTCGAGGAAGAAGCCCCGGCTAATTCCGTGCTAGCAGCCGCGGTAAGATGGGGGGGGCA 146084 Query 62 AGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTAGGTGGT 104 || ||| | |||||| ||||||||||||||| |||||| ||| Sbjct 146085 AGTGTTCTTCGGAATGACTGGGCGTAAAGGGCACGTAGGCGGT 146127 >seq213 Length=236271 Score = 86.0 bits (94), Expect = 2e-14 Identities = 107/144 (74%), Gaps = 2/144 (1%) Strand=Plus/Minus Query 131 GGCTCAACCCCGGGACTGCTTTTG-AAACTGCAGGGCTAGAGTGCAGGAGGGGCAAGTGG 189 |||||||||| || || | | || ||||| | |||||||| | | ||||||| || Sbjct 180140 GGCTCAACCCTGG-ACAGGTGGTGGAAACTACTAAGCTAGAGTACGGTAGGGGCAGAGGG 180082 Query 190 AATTCCTAGTGTAGCGGTGAAATGCGTAGATATTAGGAGGAACACCAGTGGCGAAGGCGG 249 |||| | ||| |||| ||||||||||||| || | ||||||||| | ||||| ||| Sbjct 180081 AATTTCCGGTGGAGCGATGAAATGCGTAGAGATCGGAAGGAACACCCATCGCGAAAGCGC 180022 Query 250 CTTGCTGGACTGTAACTGACACTG 273 |||||| | | |||||||||| Sbjct 180021 TCTGCTGGGCCGATACTGACACTG 179998 >seq205 Length=211261 Score = 80.6 bits (88), Expect = 6e-13 Identities = 78/98 (80%), Gaps = 2/98 (2%) Strand=Plus/Plus Query 2 ACTTGAGGAGGAAGCCCCGG-CTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGC 60 ||| ||||| |||||||| | |||||| ||||||| || ||||||||| | | |||||| Sbjct 117503 ACTCGAGGAAGAAGCCCCCGACTAACTCCGTGCCAACAACCGCGGTAAGAGGGAGGGGGG 117562 Query 61 TAGCGTTATCCGGAATTACTGGGCGTAAAGGGTGCGTA 98 || ||| | ||| || | ||||||||||||| |||| Sbjct 117563 -AGTGTTCTTCGGTATGATTGGGCGTAAAGGGCACGTA 117599 >seq527 Length=290977 Score = 73.4 bits (80), Expect = 1e-10 Identities = 60/73 (82%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 264 ACTGACACTGAGGCTCGAAAGCGTGGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC 323 |||||||||||| ||||| | |||||||||| |||||||| |||| ||||||| Sbjct 202323 ACTGACACTGAGAGACGAAATCTAGGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA 202382 Query 324 GCCGTAAACGATG 336 ||||||||||||| Sbjct 202383 GCCGTAAACGATG 202395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1202870034432