Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1431 300 3e-79 seq6 210 4e-52 seq255 100 5e-19 seq97 98.7 2e-18 seq660 95.1 2e-17 seq894 82.4 1e-13 seq1852 80.6 5e-13 >seq1431 Length=89469 Score = 300 bits (332), Expect = 3e-79 Identities = 223/257 (87%), Gaps = 4/257 (2%) Strand=Plus/Minus Query 74 TCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGGTCTGTGA 131 ||||||||||||||| | ||| | ||| | ||||||||||||||||||||||||||||| Sbjct 33641 TCTTAGAGGGACTATGGCCGCTTAGGCC-ACGGAAGTTTGAGGCAATAACAGGTCTGTGA 33583 Query 132 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTTCATCAC 191 ||||||||||||||||||||||||||||||||||||||| | |||||||| || | Sbjct 33582 TGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGTCTATAGC 33523 Query 192 CTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAGCATTGC 251 |||||||| ||| | |||||||||| | ||| | ||||| |||||||||| |||||| Sbjct 33522 CTTGGCCGACAGGCCCGGGTAATCTT-TGAAATTTCATCGTGATGGGGATAGATCATTGC 33464 Query 252 AATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTA 311 |||| ||| ||||||||||||||| ||||||||||||| ||||||||| |||||||| || Sbjct 33463 AATTGTTGGTCTTCAACGAGGAATTCCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTA 33404 Query 312 CGTCCCTGCCCTTTGTA 328 ||||||||||||||||| Sbjct 33403 CGTCCCTGCCCTTTGTA 33387 Score = 152 bits (168), Expect = 1e-34 Identities = 107/120 (89%), Gaps = 3/120 (3%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 29154 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCC-ACGGAAGTTTGAGGCAATAACAGG 29096 Query 125 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGT 184 |||||||||||||||||||||||||||||||||||||||||||||| | |||||||| Sbjct 29095 TCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTATTCAACGAGT 29036 >seq6 Length=1263909 Score = 210 bits (232), Expect = 4e-52 Identities = 185/228 (81%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCA-AGCCGATGGAAGTTTGAGGCAATAACAGGT 125 ||| |||||||||||||||||| | | | || | | ||||| ||||||||||||||||| Sbjct 297530 GCCAGCTTCTTAGAGGGACTATGGCCACTTAGGCCACGGAAGCTTGAGGCAATAACAGGT 297589 Query 126 CTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGACAGAGCCAACGAGTT 185 |||||||||||||||||||||||||||||| ||| |||||||||| | |||||||| Sbjct 297590 CTGTGATGCCCTTAGATGTTCTGGGCCGCATGCGTGCTACACTGATGTATTCAACGAGTC 297649 Query 186 CATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGTGCTGGGGATAGAG 245 || ||||||||| | | | ||||||||| | ||| | ||||| |||| ||||| Sbjct 297650 TATAGCCTTGGCCGACAAGCCCAGGTAATCTT-TGAAATTTCATCGTGATGGGAATAGAT 297708 Query 246 CATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGTC 293 ||||||||| ||| ||||||||||| ||| ||||||||| ||| ||| Sbjct 297709 AATTGCAATTGTTGGTCTTCAACGAGAAATTCCTAGTAAGTGCGAGTC 297756 >seq255 Length=465567 Score = 100 bits (110), Expect = 5e-19 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 67 GCCGGCTTCTTAGAGGGACTATCG--GCTCAAGCCGATGGAAGTTTGAGGCAATAACAGG 124 ||| |||||||||||||||||| | ||| | ||| | |||||||||||||||||||||| Sbjct 377882 GCCAGCTTCTTAGAGGGACTATGGCCGCTTAGGCC-ACGGAAGTTTGAGGCAATAACAGG 377824 Query 125 TCTGTGATGCCCTTAGATG 143 ||||||||||||||||||| Sbjct 377823 TCTGTGATGCCCTTAGATG 377805 >seq97 Length=567527 Score = 98.7 bits (108), Expect = 2e-18 Identities = 126/170 (74%), Gaps = 4/170 (2%) Strand=Plus/Plus Query 159 GCGCTACACTGACAGAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTG 218 || ||||||||| | ||| |||| || ||||||| | ||||| ||||||||| Sbjct 359735 GCACTACACTGAAATT--CAA-GAGTCTATAGCCTTGGCTGACAGGTCCAGGTAATCTT- 359790 Query 219 TTAAACTCTGTCGTGCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCC 278 | ||| | ||| | ||| ||||| |||||||||| ||| |||||||| || ||| Sbjct 359791 TGAAATTTCATCGCGATGGATATAGATCATTGCAATTGTTGGTCTTCAACAAGAAATTTT 359850 Query 279 TAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||| |||| || ||||| ||||||| ||| || |||||||||||| Sbjct 359851 TAGTACGCGCAAATCGTCAGCTTGCGTTGACTACATCTCTGCCCTTTGTA 359900 >seq660 Length=244916 Score = 95.1 bits (104), Expect = 2e-17 Identities = 69/80 (86%), Gaps = 0/80 (0%) Strand=Plus/Plus Query 105 AAGTTTGAGGCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTA 164 ||||||||| |||||||| ||||||||||||||||||||||||| || |||||| ||| | Sbjct 33268 AAGTTTGAGACAATAACATGTCTGTGATGCCCTTAGATGTTCTGAGCTGCACGCACGCAA 33327 Query 165 CACTGACAGAGCCAACGAGT 184 |||||| | |||||||| Sbjct 33328 CACTGATGTATTCAACGAGT 33347 >seq894 Length=192835 Score = 82.4 bits (90), Expect = 1e-13 Identities = 68/84 (81%), Gaps = 8/84 (10%) Strand=Plus/Plus Query 67 GCCGGCTTCTTAGAGGGACTATCGGCTCAA--------GCCGATGGAAGTTTGAGGCAAT 118 ||| |||||||||||||||||| | | | | | |||||||||||||||||| Sbjct 40092 GCCAGCTTCTTAGAGGGACTATGGTCGCTTCTTAGAGGGACTATGGAAGTTTGAGGCAAT 40151 Query 119 AACAGGTCTGTGATGCCCTTAGAT 142 |||||||||||||||||||||||| Sbjct 40152 AACAGGTCTGTGATGCCCTTAGAT 40175 >seq1852 Length=45573 Score = 80.6 bits (88), Expect = 5e-13 Identities = 49/52 (94%), Gaps = 0/52 (0%) Strand=Plus/Minus Query 277 CCTAGTAAGCGCGTGTCATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||||||||||||| ||||||||| |||||||| ||||||||||||||||||| Sbjct 45571 CCTAGTAAGCGCGAGTCATCAGCTCGCGTTGACTACGTCCCTGCCCTTTGTA 45520 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 946940239872