Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01002193.1 Length=560 Score E Sequences producing significant alignments: (Bits) Value seq86 179 1e-42 seq3511 132 2e-28 seq446 114 4e-23 seq2412 113 2e-22 seq3 82.4 3e-13 seq55 78.8 3e-12 >seq86 Length=657349 Score = 179 bits (198), Expect = 1e-42 Identities = 322/461 (70%), Gaps = 26/461 (6%) Strand=Plus/Plus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAG-GTGCGGTAACACGCCCTGGA 93 ||||||||||| | |||||| ||||| |||| ||||| | || ||||| ||| |||| Sbjct 77111 GACCCGAAACCGATCGATCTAGCCATGAGCAGGTTGAAGAGAGCTCTAACAGGCCTTGGA 77170 Query 94 GGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCT 153 || |||||||||| |||| | ||||| |||||||| ||||| |||||||||||||| Sbjct 77171 GGACCGAACCCACGTATGTGGCAAAATACGGGGATGACTTGTGGCTAGGGGTGAAAGGCC 77230 Query 154 AAACAAACTTGGAAATAGCTGGTTCTCTCCGAAAACTATTTAGGTAGTGCCTCAAGTATC 213 || ||| | ||| |||||||||| || ||||| |||||| |||| || | | || Sbjct 77231 AACCAAGATCGGATATAGCTGGTTTTCCGCGAAATCTATTTCAGTAGAGCGT--ATGATG 77288 Query 214 ACCAT---CGGGGGTAGAGCACTGTTATGGCTAGGGGG---TCATTGCGACTTACCAAAC 267 | || | | ||||||||||| |||||||| | |||| || |||||||| | Sbjct 77289 TCGATGGCCCGAGGTAGAGCACTCAATGGGCTAGGGTGGCCCCATTTCGCCTTACCAACC 77348 Query 268 CATTGCAAACTCCGAATGC--GC----ATCAGTTTTACCGCGGGAGTGAGGGCATGGGTG 321 | | ||||||||||| | || ||| || ||| || || ||||| Sbjct 77349 CCAGGGAAACTCCGAATACAGGCCTAGATCGTTTGTAC----AGACAGACTTTTAGGGTG 77404 Query 322 CTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTAAGGCCCCGAAATGACA 381 ||||| ||| ||||||| || | || || | ||||||| ||| || | Sbjct 77405 CTAAGATCCAAAGTCGAGAGGGAAACAGCCCAGATCGTACGCTAAGGTCCCTAAGCAATC 77464 Query 382 GCTAAGTTAAACTAACGAAGTCTGAT--TGCTAAGACAGCTAGGATGTTGGCTTGGAAGC 439 || ||| || || |||| |||| || | |||| | |||| || ||||||||||| Sbjct 77465 ACTTAGTGGAA--AAGGAAG--TGATCGAGCGATGACAACCAGGAGGTGGGCTTGGAAGC 77520 Query 440 AGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAG 480 ||||| || ||| |||| |||||| |||||||| ||| || Sbjct 77521 AGCCA-TCCTTTGAAGAAAGCGTAATAGCTCACTGGTCTAG 77560 >seq3511 Length=4520 Score = 132 bits (146), Expect = 2e-28 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 2 CGAGTCCGAACAGGGCGACAGTCGCTGGGTGTAGACCCGAAACCAAGTGATCTACCCATG 61 |||||| | ||||| | ||| ||| | | |||||||| | |||||||| ||||| Sbjct 4348 CGAGTCTTCATAGGGCTATTGTCACTGCTTATGGACCCGAACCTGGGTGATCTATCCATG 4289 Query 62 GCCAGGATGAAGGTGCGGTAACACGCCCTGGAGGTCCGAACCCACTAATGTTGAAAAATT 121 ||||||||||| | ||| | || |||||||||||||| ||| |||||||||||| Sbjct 4288 ACCAGGATGAAGCTTAGGTGAAACTAAGTGGAGGTCCGAACCGACTGATGTTGAAAAATC 4229 Query 122 AGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTAAACAAACTTGGAAATAGCTGGTTCTCT 181 || ||||||| ||||| ||| ||||||| || | | ||| || |||||||||||| Sbjct 4228 AGCGGATGAGTTGTGGTTAGCGGTGAAATGCCACTCGAACCCAGAGCTAGCTGGTTCTCC 4169 Query 182 CCGAAA 187 |||||| Sbjct 4168 CCGAAA 4163 >seq446 Length=326244 Score = 114 bits (126), Expect = 4e-23 Identities = 117/153 (76%), Gaps = 0/153 (0%) Strand=Plus/Minus Query 35 GACCCGAAACCAAGTGATCTACCCATGGCCAGGATGAAGGTGCGGTAACACGCCCTGGAG 94 |||||||| | |||||||| ||||| ||| ||||||| | ||| | || ||||| Sbjct 320902 GACCCGAACCTGGGTGATCTATCCATGACCATGATGAAGCTTAGGTGAAACTAAGTGGAG 320843 Query 95 GTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAAGGCTA 154 ||||||||| ||| |||||||||||| || ||||||| ||||| ||| ||| ||| || | Sbjct 320842 GTCCGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGCGGTTAAATGCCA 320783 Query 155 AACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 | ||| | |||||||||||| |||||| Sbjct 320782 CTCGAACCCAAAGCTAGCTGGTTCTCCCCGAAA 320750 >seq2412 Length=28076 Score = 113 bits (124), Expect = 2e-22 Identities = 181/254 (71%), Gaps = 6/254 (2%) Strand=Plus/Plus Query 306 AGTGAGGGCATGGGTGCTAAGGTCCGTGCCCGAGAGGAGAAGAATCCGGACTATCAGCTA 365 |||||| ||||| | |||| | | | ||||||| || | || || | |||||| Sbjct 49 AGTGAGACGATGGGGGATAAGCTTCATCGTCGAGAGGGAAACAGCCCAGATCACCAGCTA 108 Query 366 AGGCCCCGAAATGACAGCTAAGTTAAACTAACGAAGTCTGATTGCTAAGACAGCTAGGAT 425 ||||||| |||||| ||| ||| | | || || || || ||| ||||||| |||| Sbjct 109 AGGCCCCTAAATGATCGCTCAGTGATA--AAGGAGGTAGGAGTGCAGAGACAGCCAGGAG 166 Query 426 GTTGGCTTGGAAGCAGCCATTCATTTAAAGAGTGCGTAACAGCTCACTAGTCGAGGAGTC 485 ||| || | |||||||||| | || ||||||||||||| |||||||| ||||| || Sbjct 167 GTTTGCCTAGAAGCAGCCA-CCCTTCAAAGAGTGCGTAATAGCTCACTGATCGAGCGCTC 225 Query 486 GGGCGTGGATAATAATCGGGTATTAAGTTGTCTACCGAAGCAGTGGGAT-CATTTATATG 544 ||| || || | |||| |||| ||| ||||||| ||||||| | ||| Sbjct 226 TTGCGCCGAAGATGAACGGG-GCTAAGCGATCTGCCGAAGCTGTGGGATGTAAAAATA-A 283 Query 545 ATCGGTAGGGGAGC 558 |||||||||||||| Sbjct 284 ATCGGTAGGGGAGC 297 >seq3 Length=2878652 Score = 82.4 bits (90), Expect = 3e-13 Identities = 77/98 (79%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 ||||||||| ||| ||| |||||||||||| || ||||||| |||| ||| ||||||| Sbjct 2816444 TGGAGGTCCAAACTGACTGATGTTGAAAAATCAGCGGATGAGTCGTGGTTAGCGGTGAAA 2816503 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 |||| | ||| | | ||| |||||||||| |||| Sbjct 2816504 TGCTACTCGAACCTAGTGCTAGTTGGTTCTCTCTGAAA 2816541 >seq55 Length=970253 Score = 78.8 bits (86), Expect = 3e-12 Identities = 76/98 (78%), Gaps = 0/98 (0%) Strand=Plus/Minus Query 90 TGGAGGTCCGAACCCACTAATGTTGAAAAATTAGGGGATGAGCTGTGGGTAGGGGTGAAA 149 ||||| || ||||| ||| |||||||||||| || ||||||| ||||| ||| |||||| Sbjct 672124 TGGAGATCTGAACCGACTGATGTTGAAAAATCAGCGGATGAGTTGTGGTTAGCAGTGAAA 672065 Query 150 GGCTAAACAAACTTGGAAATAGCTGGTTCTCTCCGAAA 187 || | | ||| || |||||||||||| | |||| Sbjct 672064 TGCCACTCGAACCCAGAGCTAGCTGGTTCTCCCTGAAA 672027 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1689136644096