Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01002194.1 Length=319 Score E Sequences producing significant alignments: (Bits) Value seq349 80.6 5e-13 seq86 77.0 6e-12 seq735 75.2 2e-11 seq116 75.2 2e-11 seq280 73.4 7e-11 >seq349 Length=510676 Score = 80.6 bits (88), Expect = 5e-13 Identities = 62/74 (84%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 343130 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCATTAGTAGC 343189 Query 229 GGCGAGCGAAATGG 242 ||||||||| |||| Sbjct 343190 GGCGAGCGAGATGG 343203 >seq86 Length=657349 Score = 77.0 bits (84), Expect = 6e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 76452 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 76511 Query 229 GGCGAGCGAAATGGGAT 245 ||||||||| | |||| Sbjct 76512 GGCGAGCGAGAGCGGAT 76528 >seq735 Length=231921 Score = 75.2 bits (82), Expect = 2e-11 Identities = 58/69 (84%), Gaps = 0/69 (0%) Strand=Plus/Minus Query 169 GCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGT 228 |||||||||||||||| ||||||| ||||| |||||||||||||| || ||||| Sbjct 154766 GCGAACTGAAACATCTTAGTAGCTAAAGGAAGGGAAATCAACCGAGACCCCGTTAGTAGC 154707 Query 229 GGCGAGCGA 237 ||||||||| Sbjct 154706 GGCGAGCGA 154698 >seq116 Length=714382 Score = 75.2 bits (82), Expect = 2e-11 Identities = 59/71 (83%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 168 GGCGAACTGAAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAG 227 || |||||||||||||| |||||| ||||||||||| ||| | ||||||| ||||| Sbjct 342895 GGTGAACTGAAACATCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGTGATTCCCGTAGTAG 342836 Query 228 TGGCGAGCGAA 238 |||||||| || Sbjct 342835 TGGCGAGCAAA 342825 >seq280 Length=430711 Score = 73.4 bits (80), Expect = 7e-11 Identities = 61/75 (81%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 177 AAACATCTAAGTAGCTGCAGGAAAAGAAATCAACCGAGATTCCCAAAGTAGTGGCGAGCG 236 |||| ||| |||||| ||||||||||| ||| | |||||||| ||||| | |||||| Sbjct 209886 AAACTTCTTAGTAGCCAGAGGAAAAGAAAGCAAAAGCGATTCCCATAGTAGCGTCGAGCG 209945 Query 237 AAATGGGATGAGCCT 251 |||||||| ||||| Sbjct 209946 AAATGGGAGCAGCCT 209960 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 918148137984