Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1431 524 2e-146 seq922 125 2e-26 seq362 91.5 5e-16 seq86 78.8 3e-12 >seq1431 Length=89469 Score = 524 bits (580), Expect = 2e-146 Identities = 315/329 (96%), Gaps = 2/329 (1%) Strand=Plus/Minus Query 208 GTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCCACTTATTCTACACCTCTCAAGTCAT 266 ||||||||||||||||| || | | |||||||||||| |||||||||||||||||| Sbjct 61389 GTAGTGGTATTTCACTTTCGTTGTTTCCAGCTCCCACTTATCCTACACCTCTCAAGTCAT 61330 Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 326 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61329 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCA 61270 Query 327 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTT 386 |||||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||| Sbjct 61269 AGCCCGTTCCCTTGGCTGTG-TTTCGCTGGATAGTAGACAGGGACAGTGGGAATCTCGTT 61211 Query 387 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 446 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61210 AATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCA 61151 Query 447 TAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 506 |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61150 TAGTTACTCCTGTCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCA 61091 Query 507 CTGGGCAGAAATCACATTGCGTCAACATC 535 ||||||||||||||||||||||||||||| Sbjct 61090 CTGGGCAGAAATCACATTGCGTCAACATC 61062 Score = 509 bits (564), Expect = 5e-142 Identities = 287/290 (99%), Gaps = 0/290 (0%) Strand=Plus/Plus Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89053 ATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 89112 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 89113 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGAC 89172 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89173 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 89232 Query 426 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 485 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89233 TTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTC 89292 Query 486 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 535 |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 89293 TTCACTTTGACATTCAGAGCACTGGGCAGAAATCACATTGCGTCAACATC 89342 Score = 450 bits (498), Expect = 4e-124 Identities = 349/408 (86%), Gaps = 8/408 (2%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 |||||| || ||| ||||||||||||||| |||| | ||||||||||||||||||| Sbjct 59746 CTTTTGTTCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATC 59805 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||||||||||||||||||||||||||||||||||||||||||||| || ||| |||| Sbjct 59806 TTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCACCTGGATT 59865 Query 127 GGCCCGC-GAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCA 182 | || | |||| || ||| | | ||| || || | || | ||||| |||| Sbjct 59866 GACCAACCGAAGTCGATCTTGGGTCTAAAAAGAGG--GGCAGCGCCCCGCTTCCGATTCA 59923 Query 183 TTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCC 241 || ||||||||| |||| ||| ||||||||||||||||| ||| | | |||||| Sbjct 59924 CAGAATAAGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCTGTTTCCAGCTCCC 59983 Query 242 ACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 301 |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 59984 ACTTATCCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGG 60043 Query 302 TCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGT 361 ||||||||||||| |||||||||||||||||||||||||||||| |||||||| |||||| Sbjct 60044 TCTTCTTTCCCCGTTGATTCCGCCAAGCCCGTTCCCTTGGCTGT-GTTTCGCTGGATAGT 60102 Query 362 AGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 409 ||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 60103 AGACAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAA 60150 Score = 439 bits (486), Expect = 8e-121 Identities = 335/390 (86%), Gaps = 7/390 (2%) Strand=Plus/Plus Query 14 TCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGGTTTAAC 73 || ||| ||||||||||||||| |||| | ||||||||||||||||||| |||||| Sbjct 57678 TCCACACGAGATTTCTGTTCTCGTTGAGCTCATCTTAGGACACCTGCGTTATCTTTTAAC 57737 Query 74 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCGGCCCGC 133 |||||||||||||||||||||||||||||||||||||||| || ||||||| | || | Sbjct 57738 AGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCTTCCGCCCGGATTGACCAAC 57797 Query 134 -GAAG--GACCTTAACGCCAGAAAATGGTCGGTGAAGACCAG-TTCCGCTTCATTGATTA 189 |||| || |||| | | ||| || || | || | ||||| |||| || || Sbjct 57798 CGAAGTCGATCTTAGGTCTAAAAAGAGG--GGCAGCGCCCCGCTTCCGATTCACGGAATA 57855 Query 190 AGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCGAAACG-GCTCCCACTTATT 248 ||||||| |||| ||| ||||||||||||||||| ||| | | |||||||||||| Sbjct 57856 AGTAAAATAACGTTAAAAGTAGTGGTATTTCACTTTCGCTGTTTCCAGCTCCCACTTATC 57915 Query 249 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 308 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 57916 CTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTT 57975 Query 309 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGG 368 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||| Sbjct 57976 TCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGATAGTAGACAGG 58035 Query 369 GACAGTGGGAATCTCGTTAATCCATTCATG 398 |||||||||||||||||||||||||||||| Sbjct 58036 GACAGTGGGAATCTCGTTAATCCATTCATG 58065 >seq922 Length=176397 Score = 125 bits (138), Expect = 2e-26 Identities = 149/202 (74%), Gaps = 20/202 (10%) Strand=Plus/Minus Query 263 TCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCT-GATTC 321 ||||| || ||||||| | ||||||||||||||| |||| |||||| || | | |||| Sbjct 27716 TCATTGCATAAAGTCGAATTAGAGTCAAGCTCAAAAGGGCCTTCTTCCCATGTTAGATTA 27657 Query 322 CGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATC 381 || || | | |||||| ||||| || || |||||||| | | |||| Sbjct 27656 CGGCATGTCT----CCTTGGTTGTGG-----------AGCAGGTAGGGACAATAGAAATC 27612 Query 382 TCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAG 441 || ||||| |||||||| |||||||||||||| ||| |||||||||| ||||||| Sbjct 27611 TCATTAATTCATTCATGTGCGTCACTAATTAG----TGAGATATTTGGCTACATTAAGAG 27556 Query 442 AGTCATAGTTACTCCCGCCGTT 463 |||||| |||| | || |||| Sbjct 27555 AGTCATTGTTAATGTCGTCGTT 27534 >seq362 Length=369023 Score = 91.5 bits (100), Expect = 5e-16 Identities = 72/85 (85%), Gaps = 1/85 (1%) Strand=Plus/Plus Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||| |||||| ||| |||||||||||||||| |||| |||| |||| | |||| Sbjct 159668 GACGAGACATTTGCTTACTTTAAGAGAGTCATAGT-ACTCACGCCATTTATTTGTACTTG 159726 Query 476 GTTGAATTTCTTCACTTTGACATTC 500 |||||||||||||||||| |||||| Sbjct 159727 GTTGAATTTCTTCACTTTAACATTC 159751 >seq86 Length=657349 Score = 78.8 bits (86), Expect = 3e-12 Identities = 81/106 (76%), Gaps = 0/106 (0%) Strand=Plus/Minus Query 369 GACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTG 428 ||||| ||| |||||| |||||| ||| ||| ||| ||| ||| ||| |||| Sbjct 78670 GACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTC 78611 Query 429 GCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||| || ||| | ||||||| |||||||||||| | |||| Sbjct 78610 GCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTT 78565 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634751562752