Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq86 185 3e-44 seq2412 145 3e-32 seq31 138 4e-30 seq736 123 8e-26 seq280 107 7e-21 seq879 98.7 3e-18 seq1943 93.3 1e-16 seq32 87.8 6e-15 seq443 75.2 4e-11 >seq86 Length=657349 Score = 185 bits (204), Expect = 3e-44 Identities = 188/244 (77%), Gaps = 1/244 (0%) Strand=Plus/Minus Query 241 CTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTCC- 299 ||||||||||||||||||| | | || || | | |||||||||| ||||| | Sbjct 78803 CTCCCACCTATCCTACACATTCGATCAAGGTTGTCACTGCGAAGCTATAGTTAAGGTGCA 78744 Query 300 CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACCG 359 ||||||||| |||| |||| | | ||||||| || | | ||||||||||| Sbjct 78743 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 78684 Query 360 GGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACCC 419 || | || |||||||| ||| ||||||||| |||||||||||||||| ||||| | Sbjct 78683 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 78624 Query 420 GACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||||||||||||||||| |||| |||||| ||||||||||| |||||||| Sbjct 78623 GACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTTACTGCCGCCGTTTACCGGGGCTTC 78564 Query 480 AATT 483 ||| Sbjct 78563 CATT 78560 >seq2412 Length=28076 Score = 145 bits (160), Expect = 3e-32 Identities = 137/175 (78%), Gaps = 6/175 (3%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 1080 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 1021 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTCAATTACCCGCCTCACACACCACGTGG 505 ||||||||||| |||||||| || |||||||| | || || | || || Sbjct 1020 CGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCAGCTT------CCCTGTCA 967 Query 506 TGTGCTCACGAGTCCTCTTAACCTTCCAGCACCGGGCAGGCGTCAGTCCGTATAC 560 | | |||| | ||||||||||| |||| ||||||||||||| || |||| Sbjct 966 TCAGGTCACCAACTTCCTTAACCTTCCGGCACTGGGCAGGCGTCAGCCCCCATAC 912 >seq31 Length=1468034 Score = 138 bits (152), Expect = 4e-30 Identities = 87/94 (93%), Gaps = 0/94 (0%) Strand=Plus/Plus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 453557 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAC 453616 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 ||||||||||| ||||||||| || |||||||| Sbjct 453617 CGTTATAGTTACGACCGCCGTTCACCGGGGCTTC 453650 >seq736 Length=307973 Score = 123 bits (136), Expect = 8e-26 Identities = 115/146 (79%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 331 GCATCTTTACTCGTACTGCAATTTCACCGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTT 390 ||||||| || | | ||||||||||||| | || |||||||| || ||||||| Sbjct 72746 GCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGACAGTCGTT 72687 Query 391 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTA 450 || |||||||||||||||| ||||| ||||||||||||| |||||||||||| |||| Sbjct 72686 ACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTTGCTACCTTAGGACAGTTA 72627 Query 451 TAGTTACCACCGCCGTTTACTGGGGC 476 |||||| ||||| |||| | ||| Sbjct 72626 GAGTTACTGTCGCCGCTTACCGAGGC 72601 >seq280 Length=430711 Score = 107 bits (118), Expect = 7e-21 Identities = 80/94 (85%), Gaps = 0/94 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||| | ||||||||||||||||||||||||||| ||||||||||| Sbjct 200017 TCGTTACGCCTTTCGTTCGGGTCGGAACTTACCCGACAAGGAATTTTTCTACCTTAGGAC 199958 Query 446 GGTTATAGTTACCACCGCCGTTTACTGGGGCTTC 479 |||||| ||| | |||||| || |||||||| Sbjct 199957 CGTTATAATTATGGCTGCCGTTCACAGGGGCTTC 199924 >seq879 Length=184597 Score = 98.7 bits (108), Expect = 3e-18 Identities = 62/67 (93%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 386 TCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGAT 445 |||||||||| ||||||| ||||||||||||||||||||||||||||||||||||| || Sbjct 114571 TCGTTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAAGAC 114512 Query 446 GGTTATA 452 |||||| Sbjct 114511 CGTTATA 114505 >seq1943 Length=39883 Score = 93.3 bits (102), Expect = 1e-16 Identities = 280/422 (66%), Gaps = 13/422 (3%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTCACCACCTGATTGCC 60 ||||| || |||| |||||||||||||||| ||| || ||||| | || || Sbjct 33482 TCGACGGGTGGGTCTTGCAGTCAAGCTCCCTTCTGCCTTTGCACTCGAGGGCCAATCTCC 33423 Query 61 AACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCAG 120 | | | |||| |||||||| |||||||||||| |||||||||| | | ||||||| Sbjct 33422 GTCTGGCCCGAGGAAACCTTTGCACGCCTCCGTTACCTTTTGGGAGGCCTA-CGCCCCAT 33364 Query 121 TTAAACTACCCACCAGGCACTGTCCCCAACCCAG-ATCATGGGCCAAGGTTAGATATCCA 179 ||||| | ||| | |||||||| | | || ||| |||||||||| || | Sbjct 33363 AGAAACTGTCTACCTGAGACTGTCCCTTGGTCTGTATATTGGCACAAGGTTAGAATTCTA 33304 Query 180 CTACGGTCAGAGTGGTATTTCAACAACGACTCCA--CAACCACTAGCGTGGCCGCATCAT 237 | ||||||||||| ||| | | ||| | | || | | ||| | || | Sbjct 33303 GCTCTTCCAGAGTGGTATCTCACTGATGGCTCGAGCCCCCCCGGAAGGAGGC--CTTCTT 33246 Query 238 AGTCTCCCACCTATCCTACACA--AACCGCACCGAATGCCAATACCAAGCTATAGTGAAG 295 | || ||||||| || | || || | || || |||||| ||| | | ||||||| Sbjct 33245 TGCCTTCCACCTAAGCTGCGCAGGAAAAG--CCCAAAGCCAATCCCAGGGAACAGTGAAG 33188 Query 296 -GTCCCGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTT 354 || |||||||| |||| | || | | ||||||| || | | |||| Sbjct 33187 CTTCATAGGGTCTTTCTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTT 33128 Query 355 CACCGGGCCTGTGGTTGAGACAGCAGGGGAG-TCGTTACGCCATTCGTGCAGGTCGGAAC 413 ||||| | || | ||||||| | || |||||||||| ||||||| ||||||||| Sbjct 33127 CACCGAGTCTCTCTCCGAGACAG-TGCCCAGATCGTTACGCCTTTCGTGCGGGTCGGAAC 33069 Query 414 TT 415 || Sbjct 33068 TT 33067 >seq32 Length=1303039 Score = 87.8 bits (96), Expect = 6e-15 Identities = 51/53 (96%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 405 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTAC 457 |||||||||||||||||||||||||||||||||||||||| ||||||||||| Sbjct 454238 GGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTAC 454186 >seq443 Length=327196 Score = 75.2 bits (82), Expect = 4e-11 Identities = 157/231 (68%), Gaps = 5/231 (2%) Strand=Plus/Minus Query 242 TCCCACCTATCCTACACAAACCGCACCGAA--TGCCAATACCAAGCTATAGTGAAGGTCC 299 |||||||||||||||||| | ||| || || | | || | | ||| ||| | | Sbjct 227429 TCCCACCTATCCTACACATTTG--ATCGAGGTTGTCACTCCGAAACAAAAGTTAAGTTGC 227372 Query 300 C-GGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCACC 358 |||||||| ||||| |||| | | ||||||| || | | ||||||||| Sbjct 227371 ATGGGGTCTTATCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTAAATTTCACC 227312 Query 359 GGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTACC 418 || | || | || | | ||| | || |||| || |||| || |||| ||||| Sbjct 227311 AGGTCCATGTCGGGGATAACGGGGTAATCATTACACCGTTCGAGCTTGTCGCTACTTATG 227252 Query 419 CGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTA 469 ||| |||||||||||| |||||| || ||| |||||| || ||| |||| Sbjct 227251 CGATAAGGAATTTCGCCACCTTATGACAATTAGAGTTACTACTGCCATTTA 227201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1701933133824