Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq989 560 3e-157 seq1431 367 4e-99 seq1158 345 1e-92 seq706 304 4e-80 seq2585 239 1e-60 seq412 89.7 2e-15 seq1198 86.0 2e-14 seq835 78.8 3e-12 seq783 77.0 1e-11 seq2324 75.2 3e-11 >seq989 Length=278829 Score = 560 bits (620), Expect = 3e-157 Identities = 435/511 (85%), Gaps = 9/511 (2%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 |||||||||| |||||| |||| || |||||| ||| |||||||||||||||||| Sbjct 171107 GTACTCATTCTAATTACCAGACTTAAT-GAGCCCGATATTGTTATTTATTGTCACTACCT 171165 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 171166 CCCCGTGTTAGGATTGGGTAATTTGCGCGCTTGCTGCCTTCCTTGGATGTGGTAGCCGTT 171225 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||| ||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 171226 TCTCAGGCTTCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 171285 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||||||||||||||||||||||||||| |||||||||||| | ||||| || Sbjct 171286 GGCCACTATCCTACCATCGAAAGTTGATAGGGCATAAATTTGAATGATGCGTCGCCAGCA 171345 Query 241 CAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295 ||| |||| ||| || || |||||| |||||||| ||| | | | || ||| Sbjct 171346 CAAGGGCCGTGCAATCCGACGAGTTATCATGAATCATCAAAGCAACAGGCAGAGCCTGCG 171405 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 | | ||||||||||||||| | ||||||| |||||||||||| | ||| ||||||| Sbjct 171406 TCGACCTTTTATCTAATAAATGCGTCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTAG 171465 Query 355 CTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATT 414 |||||||||||| |||||||||| ||||| || ||| |||||| |||| |||||||||| Sbjct 171466 CTCTAGAATTACTACGGTTATCCGAGTAGT-AGATACCATCAAACAAACTATAACTGATT 171524 Query 415 TAATGAGCCATTCGCAGTTTCACTGTAT-AGATTGCTTATACTTAGACATGCATGGCTTA 473 ||||||||||||||||||||||| || | | ||| | ||||||| |||||||||||||| Sbjct 171525 TAATGAGCCATTCGCAGTTTCACAGTCTGAATTTGTTCATACTTACACATGCATGGCTTA 171584 Query 474 ATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||||||||||||||||||||||||||| Sbjct 171585 ATCTTTGAGACAAGCATATGACTACTGGCAG 171615 >seq1431 Length=89469 Score = 367 bits (406), Expect = 4e-99 Identities = 251/280 (90%), Gaps = 2/280 (1%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||||||||||||||||| |||| ||| |||||| |||| |||||||||||||||||| Sbjct 30240 GTACTCATTCCAATTACCAGACTCAAT-GAGCCCGGTATTGTTATTTATTGTCACTACCT 30298 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 30299 CCCCGTGTTAGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 30358 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||||||||||||||||||||||||||||||||| |||| |||||| ||||||||| Sbjct 30359 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCTCCGTCACCCGTCACCACCATGGTA 30418 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| | ||||| || Sbjct 30419 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 30478 Query 241 CAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAA 279 ||| |||| |||||| || |||||| |||||||| ||| Sbjct 30479 CAAGGGCCGTGCGATCCGACGAGTTATCATGAATCATCAA 30518 Score = 91.5 bits (100), Expect = 4e-16 Identities = 52/53 (98%), Gaps = 0/53 (0%) Strand=Plus/Plus Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10110 ATACTTACACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 10162 >seq1158 Length=130926 Score = 345 bits (382), Expect = 1e-92 Identities = 284/340 (84%), Gaps = 8/340 (2%) Strand=Plus/Minus Query 172 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCA 231 ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | Sbjct 110164 ACCATGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGTAGAAATTTGAATGATGCG 110105 Query 232 TCGCCGGCTCAA-GGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAA 290 ||||| || ||| |||| |||| | || |||||| |||||||| ||| | | | | Sbjct 110104 TCGCCAGCACAAGGGCCGTGCGTTCCGACGAGTTATCATGAATCATCAAAGCAACAGGTA 110045 Query 291 G----GGCGTTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGC 345 | |||| | ||||||||||||||| ||||||| |||||||||||| | || Sbjct 110044 GAGCCTGCGTCGACCTTTTATCTAATAAATGTGTCCCTTCCAAAAGTCGGGGTTTGTTGC 109985 Query 346 ATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGA 405 | ||||||||||||||||||| | |||||||| ||||||| ||| |||||| |||| | Sbjct 109984 ACGTATTAGCTCTAGAATTACTATGGTTATCCGAGTAGTAA-ATACCATCAAACAAACTA 109926 Query 406 TAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATT-GCTTATACTTAGACATG 464 |||||||||||||||||||||||||||||||| |||| ||| | | ||||||| ||||| Sbjct 109925 TAACTGATTTAATGAGCCATTCGCAGTTTCACAGTATGAATTAGTTCATACTTACACATG 109866 Query 465 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 |||||||||||||||||||||||||||||||||||||||| Sbjct 109865 CATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 109826 >seq706 Length=229293 Score = 304 bits (336), Expect = 4e-80 Identities = 300/383 (78%), Gaps = 25/383 (7%) Strand=Plus/Plus Query 1 GTACTCATTCCAATTACAAGACCCAAAAGAGCCCTGTATCAGTATTTATTGTCACTACCT 60 ||| ||||||||||||| |||| ||| |||||| ||| |||||||||||||||| | Sbjct 181044 GTAGTCATTCCAATTACCAGACTCAAT-GAGCCCGATATTGTTATTTATTGTCACTACTT 181102 Query 61 CCCCGTGTCGGGATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT 120 ||| |||| |||||| ||||||||||||| ||||||||||||||||||||||||||||| Sbjct 181103 CCCAGTGTTAGGATTGAGTAATTTGCGCGCATGCTGCCTTCCTTGGATGTGGTAGCCGTT 181162 Query 121 TCTCAGGCTCCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTA 180 ||||| |||||||||| ||||||||||||| | || || ||||||||| Sbjct 181163 TCTCATGCTCCCTCTC------CGAACCCTAATTCTCTGT--CC-------ACCATGGTA 181207 Query 181 GGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGCCGGCT 240 |||||||||| |||| ||| ||||||||||||||||||||||||||| | ||||| || Sbjct 181208 GGCCACTATCATACCGTCGGAAGTTGATAGGGCAGAAATTTGAATGATGCGTCGCCAGCA 181267 Query 241 C-AAGGCCATGCGATTCGTTAAGTTATTATGAATCACCAAGGAGCCCCGAAG----GGCG 295 | ||| ||||||||| || || |||||||||| ||| | | | || || Sbjct 181268 CAAAGACCATGCGATCCGACGAG---TTATGAATCATCAAAGCAACAGGCAGAGTCTGCA 181324 Query 296 TTGGTTTTTTATCTAATAAATACACCCCTTCC-GAAGTCGGGGTTTTTAGCATGTATTAG 354 | | ||||||||||||||| | ||||| |||| | | ||| | ||| ||||||| Sbjct 181325 TCGACCTTTTATCTAATAAATGTGTCGCTTCCAAAAGTTGAGATTTCTTGCACGTATTAG 181384 Query 355 CTCTAGAATTACCACGGTTATCC 377 |||||||||||| |||||||||| Sbjct 181385 CTCTAGAATTACTACGGTTATCC 181407 >seq2585 Length=30119 Score = 239 bits (264), Expect = 1e-60 Identities = 174/198 (88%), Gaps = 3/198 (2%) Strand=Plus/Minus Query 309 TAATAAATACACCCCTTCCGAA-GTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACC 367 |||||||| | ||||||| || |||||||||| | ||| ||||||||||||||||||| Sbjct 10205 TAATAAATGCGTCCCTTCCAAAAGTCGGGGTTTGTTGCACGTATTAGCTCTAGAATTACT 10146 Query 368 ACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTAATGAGCCATTC 427 |||||||||| |||||| | ||| |||||| |||| ||||||||||||||||||||||| Sbjct 10145 ACGGTTATCCGAGTAGTA-GATACCATCAAACAAACTATAACTGATTTAATGAGCCATTC 10087 Query 428 GCAGTTTCACTGTATAGATTGCTT-ATACTTAGACATGCATGGCTTAATCTTTGAGACAA 486 |||||||||| || | ||| || ||||||| ||||||||||||||||||||||||||| Sbjct 10086 GCAGTTTCACAGTCTGAATTAGTTCATACTTACACATGCATGGCTTAATCTTTGAGACAA 10027 Query 487 GCATATGACTACTGGCAG 504 |||||||||||||||||| Sbjct 10026 GCATATGACTACTGGCAG 10009 >seq412 Length=381047 Score = 89.7 bits (98), Expect = 2e-15 Identities = 72/86 (84%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 357 CTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAATAAACGATAACTGATTTA 416 |||||||||| ||||||| || |||||| | ||| || ||| |||| ||||||||||| Sbjct 247774 CTAGAATTACTACGGTTAACCGAGTAGTA-GATACCATGAAACAAACTATAACTGATTTG 247832 Query 417 ATGAGCCATTCGCAGTTTCACTGTAT 442 |||| | |||||||||||||| |||| Sbjct 247833 ATGAACAATTCGCAGTTTCACAGTAT 247858 Score = 80.6 bits (88), Expect = 8e-13 Identities = 71/86 (83%), Gaps = 2/86 (2%) Strand=Plus/Plus Query 356 TCTAGAATTACCACGGTTATCCATGTAGTAAGGTACTATCAAAT-AAACGATAACTGATT 414 ||||||||||| | |||||||| | |||| | ||| |||||| |||| ||| |||||| Sbjct 269907 TCTAGAATTACTATGGTTATCCGAGCAGTA-GATACCATCAAAACAAACTATAGCTGATT 269965 Query 415 TAATGAGCCATTCGCAGTTTCACTGT 440 |||||| ||||||||||||||| || Sbjct 269966 AAATGAGTCATTCGCAGTTTCACAGT 269991 >seq1198 Length=123978 Score = 86.0 bits (94), Expect = 2e-14 Identities = 87/111 (78%), Gaps = 3/111 (3%) Strand=Plus/Minus Query 330 AGTCGGGGTTTTTAGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGT 389 |||||||| || | ||| |||||||||||| ||||| | ||||||| |||| || Sbjct 12745 AGTCGGGGCTTGTTGCACGTATTAGCTCTAAGATTACTA--GTTATCCGAATAGT-AGAG 12689 Query 390 ACTATCAAATAAACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGT 440 | ||||||| |||| ||||||||| ||||||| ||| | |||||||| || Sbjct 12688 ATTATCAAACAAACTATAACTGATGTAATGAGTTATTTGTAGTTTCACAGT 12638 >seq835 Length=194213 Score = 78.8 bits (86), Expect = 3e-12 Identities = 49/53 (92%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 452 ATACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGACTACTGGCAG 504 ||||||| | |||||| | |||||||||||||||||||||||||||||||||| Sbjct 47477 ATACTTACATATGCATTGTTTAATCTTTGAGACAAGCATATGACTACTGGCAG 47425 >seq783 Length=205844 Score = 77.0 bits (84), Expect = 1e-11 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Plus Query 130 CCCTCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTAT 189 ||||||||||||| |||||||||||| |||| |||||| ||||| |||||||||||| Sbjct 178429 CCCTCTCCGGAATTGAACCCTAATTCTCCGTCACCCGTCACCACCATAGTAGGCCACTAT 178488 Query 190 CC 191 || Sbjct 178489 CC 178490 >seq2324 Length=20110 Score = 75.2 bits (82), Expect = 3e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 176 TGGTAGGCCACTATCCTACCATCGAAAGTTGATAGGGCAGAAATTTGAATGAACCATCGC 235 || |||| |||||||||||||| ||||||||||||| |||||||||||| || | |||| Sbjct 16134 TGTTAGGTCACTATCCTACCATTGAAAGTTGATAGGACAGAAATTTGAACGATGCGTCGC 16193 Query 236 CGGC-TCAAGGCCATGCGATTCGTTAAGTTATTATGAATCA 275 | | |||| |||||| | || ||| |||||||| Sbjct 16194 CAACAATAAGGTTGTGCGATCCAACGAGCTATCATGAATCA 16234 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1509985787904