Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1210 228 6e-55 seq520 181 8e-41 >seq1210 Length=122563 Score = 228 bits (252), Expect = 6e-55 Identities = 564/842 (67%), Gaps = 18/842 (2%) Strand=Plus/Plus Query 61096 ATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTGTCCAAAGAC 61155 ||||||||||| || |||||||| |||||||| | || || |||||||| || |||| Sbjct 42295 ATGTACAAAAAAGCCGAAGCTTCTTTCTGGACCGCCGAAGAAGTCGATTTATCGGAAGAT 42354 Query 61156 ATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACATGTGTTGGCG 61215 | || ||||| | || | ||| |||| || || || ||| || | || Sbjct 42355 CTTCATCACTGGAACAACCTAACCGACGGCGAACGCCACTTTATCTCACACGTTCTTGCC 42414 Query 61216 TTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT-TTATTGGAACGTTTCGCGCAGGA 61274 |||||||||||||| ||||| |||||| |||||| || |||| | ||| | | || Sbjct 42415 TTCTTTGCCGCTTCCGACGGCATCGTCTTGGAGAATCTTGCAGGAA-GATTCATGAAAGA 42473 Query 61275 GGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAGAATGTCCA 61334 || ||||| || ||||||||| ||||||||| |||||||| || || |||||| | || Sbjct 42474 AGTTCAAGTCTCAGAGGCGCGTGCTTTCTACGGATTCCAGATCGCAATCGAGAATATTCA 42533 Query 61335 CTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCG-GAACGTGAA 61392 || || ||||| ||| | | || || || || |||| || | | | ||| ||| Sbjct 42534 TTCTGAAATGTATAGTCTCTTGATTGAGACTTATATCAATGATTCAGTTGAGAA---GAA 42590 Query 61393 -CGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGCCTT 61451 || ||||| |||| || || ||||| || | | |||||| |||||||| | Sbjct 42591 TCGTTTGTTTCATGCAATTGAAACGATTCCTTGTATTACAAAGAAAGCTGATTGGGCTAT 42650 Query 61452 CAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGT 61511 || ||||| | | || | | | |||||| |||| | | | || ||||| || Sbjct 42651 GAAATGGAT---CGATTCATCTGATTCATTTGCTGAAAGGATCGTTGCTTTTGCTTGTGT 42707 Query 61512 CGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACT 61571 || ||| |||||||| |||| || ||||| || ||| | || |||||||| | Sbjct 42708 TGAAGGTATATTTTTCTCTGGAAGTTTCTGTGCAATTTTCTGGCTTAAAAAACGTGGTTT 42767 Query 61572 TATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATTGTGA 61631 ||||| ||| | || || || ||| | || ||||| ||||| || | |||||||| Sbjct 42768 AATGCCTGGTTTAACTTTTTCAAACGAGCTTATTTCACGTGACGAAGGACTTCATTGTGA 42827 Query 61632 TTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG-GAGGAGCGTGTGG 61690 ||||||| |||| ||| | ||| | | | ||| | | | || ||||||||| Sbjct 42828 TTTTGCTTGTTTG--ATTTATTCGC--TTTTGAGAAAGAAACTTAGCGAAGAGCGTGTGA 42883 Query 61691 GTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGCCCG 61750 |||||| || || || || ||||| |||||| | || || | || Sbjct 42884 AGACGATTGTGCGCGATGCTGTTGAGATCGAGAGAGAATTTGTTTGCGAAGCGCTTCCTT 42943 Query 61751 TCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCGACC 61810 | | | | || |||||| ||| | ||| ||||||||||| |||||||| || Sbjct 42944 GCGCTTTAGTTGGAATGAATGGTGATTTGATGAGTCAGTATATTGAGTTTGTTGCTGATA 43003 Query 61811 GTCTGTTG-GTCGATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTTGATTTC 61869 | ||||| || |||| | || | || |||||| | || || ||||||| Sbjct 43004 GATTGTTGTGTGAGCTTGGTTGTG-GGAAAATTTATAATGTTCAGAATCCTTTTGATTGG 43062 Query 61870 ATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAACGTGTAGGCGACTAT 61929 ||||| |||||||||| | || || || || ||||| ||||| || || ||||| ||| Sbjct 43063 ATGGATTTGATTTCGCTTCAGGGGAAAACTAACTTTTTTGAGAAGCGCGTTGGCGAGTAT 43122 Query 61930 CA 61931 || Sbjct 43123 CA 43124 >seq520 Length=294854 Score = 181 bits (200), Expect = 8e-41 Identities = 566/856 (66%), Gaps = 28/856 (3%) Strand=Plus/Minus Query 61087 ATTTGGCGCATGTACAAAAAGGCGGAAGCTTCCTTCTGGACGGTGGAGGAGGTCGATTTG 61146 |||||| ||||||||||| || |||||||| |||||||| | || || |||||| | Sbjct 262643 ATTTGGGAAATGTACAAAAAAGCCGAAGCTTCATTCTGGACAGCAGAAGAAGTCGATCTC 262584 Query 61147 TCCAAAGACATGAATGACTGGGAGCGTTTATCGAGCGGTGAACAACATTTCATTAAACAT 61206 || |||| | | ||||| | || | ||| |||| || ||||| ||| Sbjct 262583 TCACAAGATCTTCCTCACTGGAACAACCTAACCGACGGCGAACGTCACTTCATCTCACAC 262524 Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAAT-TTATTGGAACGTTT 61265 || | || ||||||||||| || |||||||| ||| |||||| || |||| | || Sbjct 262523 GTTCTTGCTTTCTTTGCCGCCTCCGACGGTATAGTCTTGGAGAATCTTGCCGGAA-GATT 262465 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | | | || || ||||| || ||||| ||| || ||||| |||||||| || || || Sbjct 262464 CATGAAAGAAGTTCAAGTCTCTGAGGCACGTGCCTTTTACGGTTTCCAGATCGCGATTGA 262405 Query 61326 GAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGA-GCGGGCGG 61384 || | || || || ||||| ||| | | || || || || |||| || | || Sbjct 262404 AAACATTCATTCTGAAATGTATAGTCTCTTGATTGAGACTTATATCAATGATTCTATCGA 262345 Query 61385 AACGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGC--GGAAAGCGGA 61442 || | | || || || |||| || || ||||| || || || |||||| || Sbjct 262344 AAAG-AATCGTTTATTTCATGCAATTGACACGATTCC--TTGTATTGCCAAGAAAGCTGA 262288 Query 61443 TTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATT 61502 |||||| | || ||||| | | || | | | |||||| |||| || | | || || Sbjct 262287 TTGGGCTATGAAATGGAT---CGATTCATCTGATTCATTTGCTGAAAGAATCGTTGCTTT 262231 Query 61503 TGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCG--CAATCTTTTGGTTGAAG 61560 ||| || || ||| |||||||| || | |||| | | |||| |||||| | || Sbjct 262230 TGCTTGTGTTGAAGGTATATTTTTCTCCGG-TAGTTT-CTGTTCAATTTTTTGGCTTAAA 262173 Query 61561 AAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGC 61620 |||||||| | ||||| ||| | || || || ||| | || ||||| ||||| || Sbjct 262172 AAACGTGGTTTAATGCCTGGTTTAACTTTTTCAAACGAGCTTATTTCACGTGACGAAGGT 262113 Query 61621 ATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCG-GA 61679 | ||||||||||||||| ||| | || | ||| | | | ||| | | | || Sbjct 262112 CTTCATTGTGATTTTGCTTGTTTAC--TTTATTCGC--TTTTGAGAAAGAAACTTAGTGA 262057 Query 61680 GGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGA 61739 ||||||||| ||||||||||| ||||| || || |||||| | ||| Sbjct 262056 AGAGCGTGTGAAAACTATTGTTCGTGATGCGGTTGAAATTGAGAGAGAATTTGTTTGTGA 261997 Query 61740 --CGCTTTGCCCGTCT-CACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGA 61796 ||||| || | | | | | || ||||| ||| | ||| || |||||||| Sbjct 261996 AGCGCTT---CCTTGTGCTTTGGTTGGAATGAACGGTGATTTGATGAGTCAATATATTGA 261940 Query 61797 ATTTGTTGCCGACCGTCTGTT-GGTCGATTTGGGTATGAAGCGGATCTATAATACGAAAA 61855 |||||||| || | | || ||| | |||| | || | || |||||| | | Sbjct 261939 GTTTGTTGCTGATAGATTATTGGGTGAACTTGGTTGTGGA-AAAATTTATAATGTTCAGA 261881 Query 61856 ACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAAAC 61915 | || ||||||| ||||| ||||||| || | || || || || ||||| ||||| | Sbjct 261880 ATCCTTTTGATTGGATGGAATTGATTTCACTTCAGGGGAAAACTAACTTTTTTGAGAAGC 261821 Query 61916 GTGTAGGCGACTATCA 61931 | || || || ||||| Sbjct 261820 GCGTTGGGGAATATCA 261805 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397435120847360