Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_031906.1 Length=198190 Score E Sequences producing significant alignments: (Bits) Value seq2319 360 2e-94 seq432 295 8e-75 seq318 134 2e-26 seq219 111 2e-19 seq2286 109 7e-19 seq2312 104 3e-17 seq1196 104 3e-17 seq814 104 3e-17 seq686 100 4e-16 seq1868 98.7 1e-15 seq5156 95.1 2e-14 seq2162 95.1 2e-14 >seq2319 Length=57875 Score = 360 bits (398), Expect = 2e-94 Identities = 432/587 (74%), Gaps = 0/587 (0%) Strand=Plus/Minus Query 189250 CCTGTTGCAGCAGCATCCGCAGTCTTTCTGGTCTATCCTTTTGGTCAAGGTTCTTTCTCT 189309 || |||||||| || | ||||| || || |||| || ||||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 189310 GACGCAATGCCCTTGGGTATCAGTGGAACCTTCAACTACATGCTTGTCTTCCAAGCAGAG 189369 || | ||||| | || ||| ||| || ||||||| ||| |||| || || || ||| Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 189370 CACAACATCCTGATGCACCCCTTCCACATGCTGGGAGTCGCAGGTGTCTTCGGTGGTTCA 189429 || || || || ||||| || || |||||| | || || || ||||| ||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 189430 CTGTTCTCCGCAATGCATGGTTCACTCGTTACCTCTTCACTGGTTCGTGAAACCACTGAA 189489 || ||| || ||||| ||||| | || || ||| || | | ||||| || ||| Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 189490 ACCGAGTCCCAGAACTATGGTTACAAGTTTGGACAAGAAGAAGAAACGTACAACATCGTT 189549 | || || ||| | ||||||| || || ||||| |||||||| || || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 189550 GCTGCTCATGGATATTTCGGTCGTCTTATCTTCCAATATGCATCGTTCAACAACTCCCGT 189609 ||||||||||| ||||| || || | ||||||||||| || ||||||||||| ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 189610 TCACTTCACTTCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGC 189669 || | || |||||||| ||||| ||||| || || ||||||||||||||||| | || Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 189670 GTCAGCACCATGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGT 189729 |||| || ||||| ||||| | ||||| || || || || |||||| | ||||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 189730 CAAGGTCGTGTTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAA 189789 ||||||||||| | ||||| ||||| || || | ||||||||| |||||||||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 189790 GTCATGCATGAGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 || |||||||| ||||||||||| || |||||||| || || || || Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGC 17996 >seq432 Length=331984 Score = 295 bits (326), Expect = 8e-75 Identities = 382/525 (73%), Gaps = 2/525 (0%) Strand=Plus/Plus Query 190203 CATTCTCTTCTTCTACTTTGGGGTCCTGAATCTCAAGGCGATTTCGTCAGGTGGATCCAA 190262 |||||| | | |||| |||||||||||| | || || ||||| | | ||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 190263 CTTGGGGGACTCTGGGCTTTTGTGGCGCTCCACGGGGCTTTCGCTCTAATTGGATTCATG 190322 | || || || ||| ||||||| || || ||||| ||||||| |||| || || ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 190323 CTTCGTCAGTTTGAACTGGCACG-TCTCATCGGTATCCGTCCTTACAATGCTATTGCGTT 190381 | ||||| |||||||| || || ||| || | | || ||||| ||||| || || || Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAAT-TGCGGCCTTATAATGCAATCGCATT 47668 Query 190382 CTCTGGTCCTATCGCTGTTTTTGTTAGCGTCTTTCTCATCTACCCTCTGGGTCAATCGAG 190441 ||| ||||| || |||||||||||| || || || || || || |||||||| || | Sbjct 47669 CTCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGG 47728 Query 190442 TTGGTTCTTCGCGCCATCCTTCGGTGTGGCAGCGATCTTCCGCTTCCTCCTCTTCTTGCA 190501 ||||||||| || || || ||||| ||||| || || || ||| | ||||| || || Sbjct 47729 TTGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCA 47788 Query 190502 GGGCTTCCATAACTGGACGCTGAACCCCTTCCACATGATGGGTGTTGCAGGTATCCTGGG 190561 || || ||||| ||||| | ||||| || || |||||||| ||||| ||| | |||| Sbjct 47789 AGGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGG 47848 Query 190562 AGGAGCACTACTGTCAGCAATCCATGGTGTGACTGTAGAGAATACTTTGTATGAAGATGG 190621 | || ||| | | || || ||||| | || ||||| ||||| || | ||||||||| Sbjct 47849 CGCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGG 47908 Query 190622 TGAACAAGCAAACACGTTTAAAGCATTCGACTCTACACAAGAGGAAGAGACCTATTCGAT 190681 || ||||| || || || || || | || |||| |||||| || ||||| || Sbjct 47909 GGATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAAT 47968 Query 190682 GGTCACTGCCAACCGTTTCTGGTCTCAAATCTTTGGTGTTGCGTT 190726 |||||| || ||||| || ||||| ||||||||||| ||||| || Sbjct 47969 GGTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTT 48013 >seq318 Length=400206 Score = 134 bits (148), Expect = 2e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 189620 TCTTCCTCGCTGCCTGGCCAGTCGTGGGTATCTGGTTTACCGCCCTCGGCGTCAGCACCA 189679 ||||| | ||||| || || || || ||||||||||||| || | || |||| || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 189680 TGGCATTCAACCTCAATGGGTTCAACTTCAATCAATCCATTCTTGATGGTCAAGGTCGTG 189739 |||| ||||| | ||| | || || || || |||||| | ||||| ||||||||||| Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 189740 TTCTGAACACATGGGCAGACGTTCTCAACCGTGCTGGTCTTGGTATGGAAGTCATGCATG 189799 | | ||||| ||||| || | | ||||||||| |||||||||||||| |||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 189800 AGCGTAACGCTCACAACTTCCCTCTTGATCTGGCAGC 189836 | |||||| |||| || || |||| || || || || Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGC 349309 >seq219 Length=535087 Score = 111 bits (122), Expect = 2e-19 Identities = 156/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 188893 GGTTGGTTCGGTGTCCTGATGATCCCTACGCTTCTCG-CTGCAACCATCTG-CTTCATCG 188950 || ||||| ||||| ||||||||||||| ||| | | | |||| | |||| || || Sbjct 252280 GGATGGTTTGGTGTTTTGATGATCCCTAC-CTTATTGACCGCAA-CTTCTGTATTTATTA 252223 Query 188951 TCGCCTTTGTCGCTGCACCCCCTGTAGACATTGATGGCATCCGCGAACCCGTCGCTGGTT 189010 |||| || | ||||| || |||||||| |||||||| || || || || || |||| | Sbjct 252222 TCGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGAT 252163 Query 189011 CACTCATGTATGGAAACAACATCATCTCTGGTGCTGTTGTCCCTTCATCCAACGCAATTG 189070 | || | || |||||||| || || || ||||| || | ||| | || || |||| Sbjct 252162 CTCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTG 252103 Query 189071 GTCTTCACTTCTACCCCATCTGGGAAGCCGCCTC 189104 || | ||||| ||||| || |||||||| || || Sbjct 252102 GTTTGCACTTTTACCCGATATGGGAAGCTGCATC 252069 >seq2286 Length=21248 Score = 109 bits (120), Expect = 7e-19 Identities = 102/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| |||||| || ||||| |||||||| || ||||| || ||||| ||||||||| Sbjct 6813 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 6754 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 || ||||| || ||||| | ||||| |||||||||||| | ||||| || || | | Sbjct 6753 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 6694 Query 190776 GGTCTGTGGA 190785 ||| | |||| Sbjct 6693 GGTTTATGGA 6684 >seq2312 Length=20438 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| |||||| || ||||| |||||||| || ||||| || ||||| ||||||||| Sbjct 19761 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 19702 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 || ||||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 19701 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACA 19642 Query 190776 GGTCTGTGGA 190785 ||| | |||| Sbjct 19641 GGTTTATGGA 19632 >seq1196 Length=183224 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| |||||| || ||||| |||||||| || ||||| || ||||| ||||||||| Sbjct 19718 ACCCAAGCGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 19659 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 || ||||| || ||||| | ||||| |||||||||||| | ||||| | || | | Sbjct 19658 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCGAGTAACG 19599 Query 190776 GGTCTGTGGA 190785 ||| | |||| Sbjct 19598 GGTTTATGGA 19589 >seq814 Length=198837 Score = 104 bits (114), Expect = 3e-17 Identities = 101/130 (78%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || ||| |||||| || ||||| |||||||| || ||||| || ||||| ||||||||| Sbjct 115059 ACCCAAACGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 115118 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 || ||||| || ||||| | ||||| |||||||||||| | ||||| || || | | Sbjct 115119 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACG 115178 Query 190776 GGTCTGTGGA 190785 ||| | |||| Sbjct 115179 GGTTTATGGA 115188 >seq686 Length=409839 Score = 100 bits (110), Expect = 4e-16 Identities = 100/130 (77%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| |||||| || ||||| |||||||| || ||||| || ||||| ||||||||| Sbjct 52872 ACCCAAGTGGAAGAAACTTATTCAATGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 52931 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 || ||||| || ||||| | ||||| ||||| |||||| | ||||| || || | | Sbjct 52932 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTGTTTATGTTATTTGTCCCAGTAACG 52991 Query 190776 GGTCTGTGGA 190785 || | |||| Sbjct 52992 AGTTTATGGA 53001 >seq1868 Length=44937 Score = 98.7 bits (108), Expect = 1e-15 Identities = 92/116 (79%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| |||||| || ||||| ||||||||||| ||||| || ||||| |||||| || Sbjct 39539 ACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCAAATC-TT 39597 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGT 190771 || ||||| || ||||| | ||||| |||||||||||| | ||||| || || Sbjct 39598 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq5156 Length=1562 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Minus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| |||||| || ||||| ||||||| || ||||| || ||||| |||||||| Sbjct 921 ACCCAAGCGGAAGAAACTTATTCAGTGGTCACCGCTAACCGCTTATGGTCCCAAATCTTC 862 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 || ||||| || ||||| | ||||| |||||||||||| | ||||| || | | | Sbjct 861 GGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAATAACG 802 Query 190776 GGTCTGTGGA 190785 ||| | |||| Sbjct 801 GGTTTATGGA 792 >seq2162 Length=26882 Score = 95.1 bits (104), Expect = 2e-14 Identities = 99/130 (76%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 190656 ACACAAGAGGAAGAGACCTATTCGATGGTCACTGCCAACCGTTTCTGGTCTCAAATCTTT 190715 || |||| ||| || || ||||| ||||||| || ||||| || ||||| ||||||||| Sbjct 20876 ACCCAAGCGGAGGAAACTTATTCATTGGTCACCGCTAACCGCTTTTGGTCCCAAATCTTT 20935 Query 190716 GGTGTTGCGTTCAGTAATAAGAGGTGGTTGCATTTCTTTATGCTCTTTGTTCCTGTTATG 190775 || ||||| || ||||| | ||||| |||||||||||| | ||||| || || | Sbjct 20936 GGGGTTGCTTTTTCCAATAAATGTTGGTTACATTTCTTTATGTTATTTGTCCCAGTAACT 20995 Query 190776 GGTCTGTGGA 190785 ||| | |||| Sbjct 20996 GGTTTATGGA 21005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633862637376000