Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Trifolium_20subterraneum_20[genbank_20GCA_5F001742945.1_202016-07- 20] 27,424 sequences; 471,834,188 total letters Query= NC_031922.1 Length=174830 Score E Sequences producing significant alignments: (Bits) Value seq2319 421 7e-113 seq432 304 1e-77 seq1296 163 3e-35 seq219 141 1e-28 seq200 127 2e-24 seq318 109 6e-19 seq1868 104 3e-17 seq145 100 3e-16 seq177 91.5 2e-13 >seq2319 Length=57875 Score = 421 bits (466), Expect = 7e-113 Identities = 449/593 (76%), Gaps = 0/593 (0%) Strand=Plus/Minus Query 160971 CCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGGTCAAGGTTCTTTCTCT 161030 || ||||| ||||| | |||||| ||| | |||| || | ||||| || || || Sbjct 18582 CCAGTTGCAGCTGCTACTGCAGTTTTCTTGATCTACCCAATTGGTCAGGGAAGCTTTTCA 18523 Query 161031 GATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAGGCAGAA 161090 ||||||||||| || || ||||||||||| |||||||| ||| |||| || ||||| || Sbjct 18522 GATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAGGCTGAG 18463 Query 161091 CACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGTGGTTCT 161150 || || || || ||||| || || |||||||| ||||| |||||||| ||||| || || Sbjct 18462 CATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGCGGCTCC 18403 Query 161151 CTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACCACTGAG 161210 || ||| || ||||| ||||| |||| |||||| || | | ||||| || || Sbjct 18402 CTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACTACAGAA 18343 Query 161211 AACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCTACAACATCGTC 161270 || || || ||| | ||||||| || |||||||| ||||| ||||| || || || Sbjct 18342 AATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCTATAATATTGTA 18283 Query 161271 GCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTTCAACAACTCCCGT 161330 |||||||||||||| || || || ||||||||||||||||| ||||||||||| ||| Sbjct 18282 GCTGCTCATGGTTATTTTGGCCGATTGATCTTCCAATACGCTAGTTTCAACAACTCTCGT 18223 Query 161331 TCGTTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGT 161390 || || || |||||||| || || |||||||| || ||||||||||| || || | ||| Sbjct 18222 TCTTTACATTTCTTCCTAGCTGCTTGGCCTGTAGTAGGTATCTGGTTTACCGCGTTAGGT 18163 Query 161391 GTCTCCACCATGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGT 161450 || || ||||| ||||| | || ||||| || || ||||| ||| || | ||| | Sbjct 18162 ATCAGTACTATGGCTTTCAATTTAAATGGATTTAATTTTAACCAATCCGTCGTTGATTCT 18103 Query 161451 CAGGGCAAAGTCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAA 161510 || || || | |||||||||||||| || | || ||||||||||||||||||||| Sbjct 18102 CAAGGTCGTGTAATTAACACCTGGGCTGATATTATTAACCGTGCTAACCTTGGTATGGAA 18043 Query 161511 GTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 || ||||| || ||||| ||||| || |||||||| || || ||||| | ||| Sbjct 18042 GTTATGCATGAACGTAACGCTCATAATTTCCCTCTAGACCTAGCTGCGGTTGA 17990 >seq432 Length=331984 Score = 304 bits (336), Expect = 1e-77 Identities = 387/533 (73%), Gaps = 0/533 (0%) Strand=Plus/Plus Query 164103 CATTCTCTTCTTCTACTTTGGGGTCCTGAGTCTCAGGGGGACTTCATTAGGTGGTGCCAA 164162 |||||| | | |||| ||||||||||| | ||||| || || | | ||||| ||| Sbjct 47490 CATTCTTTGTTGTTACTGTGGGGTCCTGAAGCACAGGGAGATTTTACCCGTTGGTGTCAA 47549 Query 164163 CTTGGGGGACTCTGGGCTTTTGTGGCGTTCCACGGATCTTTCGCTCTGATCGGTTTCATG 164222 | || || || ||| ||||||| || | ||||| |||||| | || ||||| ||| Sbjct 47550 TTAGGTGGTCTGTGGACTTTTGTTGCTCTTCACGGTGCTTTCGGATTAATAGGTTTTATG 47609 Query 164223 CTTCGGCAGTTTGAAATTGCACGTCTTGTAGGTATCCGTCCGTACAATGCTATTGCGTTC 164282 | || || |||||| |||| || ||| | || || || ||||| || || ||| Sbjct 47610 TTACGTCAATTTGAACTTGCTCGATCTGTTCAATTGCGGCCTTATAATGCAATCGCATTC 47669 Query 164283 TCTGGTCCGATTGCTGTCTTTGTCAGCGTTTTCCTTATGTACCCTCTCGGGCAATCTAGT 164342 || ||||| |||||||| ||||| || |||||||| || || || || || ||| || Sbjct 47670 TCCGGTCCAATTGCTGTTTTTGTTTCTGTATTCCTTATTTATCCACTGGGTCAGTCTGGT 47729 Query 164343 TGGTTCTTTGCCCCCTCGTTTGGGGTCGCGGCGATCTTCAGATTCCTCTTGTTCCTCCAA 164402 ||||||||||| || ||||| || || || || || ||||| | | || ||||| Sbjct 47730 TGGTTCTTTGCACCTAGTTTTGGTGTAGCAGCTATATTTCGATTCATTCTCTTTTTCCAA 47789 Query 164403 GGTTTCCATAACTGGACACTCAACCCCTTCCATATGATGGGTGTTGCAGGCATCCTTGGT 164462 || || ||||| |||||| | ||||| || ||||||||||| ||||| || | | || Sbjct 47790 GGGTTTCATAATTGGACATTAAACCCATTTCATATGATGGGAGTTGCTGGTGTATTGGGC 47849 Query 164463 GGTGCTCTTCTCTGTGCTATTCATGGTGCTACCGTAGAGAATACTTTGTTTGAAGATGGT 164522 | || || | || ||||||||||| ||||||||||| ||||| || ||||||||||| Sbjct 47850 GCCGCCCTATTATGCGCTATTCATGGCGCTACCGTAGAAAATACCTTATTTGAAGATGGG 47909 Query 164523 GAACAATCAAATACTTTCAAGGCATTCGAGCCTACTCAAGAGGAAGAGACTTACTCGATG 164582 || ||||||| ||| || || | || || |||| |||||| ||||| || ||| Sbjct 47910 GATGGTGCAAATACATTCCGTGCTTTTAACCCAACCCAAGCGGAAGAAACTTATTCAATG 47969 Query 164583 GTCACTGCCAACCGCTTCTGGTCTCAGATTTTTGGTATTGCTTTCAGCAATAA 164635 ||||| || |||||||| ||||| || || ||||| ||||||| |||||| Sbjct 47970 GTCACCGCTAACCGCTTTTGGTCCCAAATCTTTGGGGTTGCTTTTTCCAATAA 48022 >seq1296 Length=110557 Score = 163 bits (180), Expect = 3e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 161025 TTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCATGCTTGTCTTCCAG 161084 || || ||||||||||| || || ||||||||||| |||||||| ||| |||| || ||| Sbjct 75580 TTTTCAGATGGTATGCCTCTAGGAATCTCTGGTACTTTCAACTTTATGATTGTATTTCAG 75521 Query 161085 GCAGAACACAACATCCTGATGCACCCCTTCCACATGTTGGGTGTTGCTGGTGTCTTCGGT 161144 || || || || || || ||||| || || |||||||| ||||| |||||||| ||||| Sbjct 75520 GCTGAGCATAATATTCTTATGCATCCGTTTCACATGTTAGGTGTAGCTGGTGTATTCGGC 75461 Query 161145 GGTTCTCTGTTCTCCGCAATGCATGGTTCACTGGTTACTTCTTCCCTGGTTCGTGAAACC 161204 || || || ||| || ||||| ||||| |||| |||||| || | | ||||| Sbjct 75460 GGCTCCCTATTCAGTGCTATGCACGGTTCCTTGGTAACTTCTAGTTTGATCAGGGAAACT 75401 Query 161205 ACTGAGAACGAGTCCCAGAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGACCT 161259 || || || || || ||| | ||||||| || |||||||| ||||| |||| Sbjct 75400 ACAGAAAATGAATCTGCGAATGAAGGTTACAGATTCGGTCAAGAGGAAGAAACCT 75346 >seq219 Length=535087 Score = 141 bits (156), Expect = 1e-28 Identities = 165/220 (75%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 160614 GGTTGGTTCGGTGTGCTGATGATCCCAACTCTGTTGGCAGCAACCGTCTGC-TTTATTAC 160672 || ||||| ||||| |||||||||| || | ||| | ||||| |||| ||||||| Sbjct 252280 GGATGGTTTGGTGTTTTGATGATCCCTACCTTATTGACCGCAACT-TCTGTATTTATTAT 252222 Query 160673 TGCGTTCGTTGCTGCTCCCCCCGTGGACATCGACGGTATCCGTGAACCCGTTGCTGGTTC 160732 || ||| ||||||| || || || || || || ||||| ||||| || ||| |||| || Sbjct 252221 CGCTTTCATTGCTGCCCCTCCTGTAGATATTGATGGTATTCGTGAGCCTGTTTCTGGATC 252162 Query 160733 ACTGATGTATGGAAACAACATCATCTCTGGTGCAGTTGTTCCTTCTTCCAACGCAATTGG 160792 || | || |||||||| || || || ||||| || ||||| |||| || ||||| Sbjct 252161 TCTACTTTACGGAAACAATATAATTTCGGGTGCCATTATTCCTACTTCTGCGGCTATTGG 252102 Query 160793 TCTTCACTTCTACCCCATTTGGGAAGCTGCATCTCTTGAT 160832 | | ||||| ||||| || |||||||||||||| ||||| Sbjct 252101 TTTGCACTTTTACCCGATATGGGAAGCTGCATCCGTTGAT 252062 >seq200 Length=959787 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 164655 ATGCTCTTTGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCA 164714 ||| | ||||| || || | || | |||| ||| || |||| | ||||||| || Sbjct 265389 ATGTTATTTGTCCCAGTAACTGGTTTATGGATGAGTGCTCTTGGAGTAGTCGGTCTGGCC 265330 Query 164715 CTCAATCTTCGTGCTTATGATTTTGTGTCTCAGGAGATTAGAGCAGCAGAGGATCCTGAA 164774 || || || ||||| ||||| || || ||||| || || | ||||| || ||||||||| Sbjct 265329 CTGAACCTACGTGCCTATGACTTCGTTTCTCAAGAAATCCGCGCAGCGGAAGATCCTGAA 265270 Query 164775 TTTGAGACGTTCTATACGAAGAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCT 164834 |||||||| ||||| || || || || ||| | || ||||| | ||||| |||||||| Sbjct 265269 TTTGAGACTTTCTACACCAAAAATATTCTCTTAAACGAAGGTATTCGTGCGTGGATGGCG 265210 Query 164835 CCAGTAGACCAGCCACACGAATCGTTTGTATTTCCAGAGGAAGTTCTTCC 164884 | ||| ||||| || ||| || |||| || ||||| ||||| || Sbjct 265209 GCTCAAGATCAGCCTCATGAAAACCTTATATTCCCTGAGGAGGTTCTACC 265160 >seq318 Length=400206 Score = 109 bits (120), Expect = 6e-19 Identities = 158/223 (71%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 161341 TCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTTCACTGCACTTGGTGTCTCCACCA 161400 ||||| | || || || ||||| || ||||||||||| | | | ||| || || Sbjct 349093 TCTTCTTAGCTGCTTGACCTGTAGTAGGTATCTGGTTTATCGTGTTAGGTATCAGTACTG 349152 Query 161401 TGGCATTCAACCTGAACGGATTCAACTTCAACCAGTCCATCATGGATGGTCAGGGCAAAG 161460 |||| ||||| | || |||| || || ||||| ||| || | ||| ||| || | Sbjct 349153 TGGCTTTCAATTTAAATTGATTTAATTTTAACCAATCCGTCGTTGATTCTCAAGGTCGTG 349212 Query 161461 TCCTGAACACCTGGGCTGACGTTCTGAATCGTGCTAACCTTGGTATGGAAGTAATGCACG 161520 | | ||||| |||||||| | | || ||||||||||||||||||||||| ||||| Sbjct 349213 TAATTAACACTTGGGCTGATACTATTAACCGTGCTAACCTTGGTATGGAAGTTATGCATA 349272 Query 161521 AGCGTAATGCTCACAACTTCCCTCTGGATCTCGCTGCTGCTGA 161563 | ||||| |||| || || |||| || || ||||| | ||| Sbjct 349273 AACGTAACACTCATAATTTTCCTCCAGAGCTAGCTGCGGTTGA 349315 >seq1868 Length=44937 Score = 104 bits (114), Expect = 3e-17 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 164553 CCTACTCAAGAGGAAGAGACTTACTCGATGGTCACTGCCAACCGCTTCTGGTCTCAGATT 164612 || || |||| |||||| ||||| || ||||||||||| |||||||| ||||| || | | Sbjct 39536 CCAACCCAAGCGGAAGAAACTTATTCAATGGTCACTGCTAACCGCTTTTGGTCCCA-AAT 39594 Query 164613 TTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGCTCTTTGTTCCTGT 164671 |||| ||||||| |||||| |||||||| || ||||||||| | ||||| || || Sbjct 39595 CTTGGGGTTGCTTTTTCCAATAAACGTTGGTTACATTTCTTTATGTTATTTGTCCCAGT 39653 >seq145 Length=649883 Score = 100 bits (110), Expect = 3e-16 Identities = 131/177 (74%), Gaps = 7/177 (4%) Strand=Plus/Minus Query 160896 TGCTACATGGGTCGCGAGTGGGAACTTTCCTACCGCCTCGGCATGCGCCCCTGGATCTGC 160955 || ||||||||||| |||||||||| | || | || |||||||| ||||| ||| Sbjct 132358 TGTTACATGGGTCGTAAGTGGGAACTAAGTTTTCGTTTGGGTATGCGCCCTTGGAT-TGC 132300 Query 160956 -GTTGCATATTCTGCACCTGTTGCTGCTGCGAGTGCAGTATTCCTCGTCTATCCTTTCGG 161014 ||||||||||| || || ||| || |||| ||| | ||| | ||||||| | || Sbjct 132299 TGTTGCATATTCAGCTCCAGTTACTACTGC-AGT----TTTTCTTAATCTATCCAATTGG 132245 Query 161015 TCAAGGTTCTTTCTCTGATGGTATGCCCCTGGGTATCTCTGGTACCTTCAACTTCAT 161071 ||| || || | ||||||||||| ||||| |||||| |||| |||||||| || Sbjct 132244 TCAGGGAAGCTTTTTAGATGGTATGCCTCTGGGAATCTCTAGTACTTTCAACTTTAT 132188 >seq177 Length=575278 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 50156 TGTTCCTCTTGTGCTGGTAAAATCATTGAGGGTACTGTTGACCAGGAAGATCAATCATTT 50215 ||||| ||||||||||||||| | || | ||| |||| | ||||||||| || || Sbjct 226766 TGTTCTTCTTGTGCTGGTAAAGTTGTTAATGGTGGTGTTAATCAGGAAGATGGTTCTTTC 226825 Query 50216 CTTGATGATGATCAACTTGAAGCTGGTTTTGTCTTGACATGTGTAGCTCGTCCTACTTCG 50275 ||||||||||| ||| |||||| |||| || | || ||||| ||| ||||| || Sbjct 226826 CTTGATGATGACCAAATTGAAGAAGGTTGGGTTCTTACTTGTGTTGCTTACCCTACATCT 226885 Query 50276 GACTGTACTATTGAAACAGGAAAAGAAGAAGAACT 50310 || ||||||||| || || ||||| || || Sbjct 226886 GATGTTACTATTGAGACTCACAAGGAAGACGATCT 226920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 559136262361600