Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01000190.1 Length=117 Score E Sequences producing significant alignments: (Bits) Value seq7393 129 3e-28 seq175506 89.7 3e-16 seq58141 75.2 6e-12 >seq7393 Length=225 Score = 129 bits (142), Expect = 3e-28 Identities = 101/118 (86%), Gaps = 2/118 (2%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| ||||| || ||||||| | Sbjct 76 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 134 Query 60 CGATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTATCTGATCGTCTTCGA 117 ||||||| |||||||| ||||| |||| |||||| |||||||||||||||||||||| Sbjct 135 TGATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTATCTGATCGTCTTCGA 192 >seq175506 Length=4870 Score = 89.7 bits (98), Expect = 3e-16 Identities = 81/102 (79%), Gaps = 0/102 (0%) Strand=Plus/Minus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGCGAGTCAAAATGATAACATCGCCC 60 ||||||||| ||||||||||| ||||||||| | ||||| || ||||||| Sbjct 102 GAACCCAAATTTTTTGATTTCTCATAAGGTGCCAACGGAGTCCTAAAAGTAACATCCGTT 43 Query 61 GATCCCTAGTCGGCATAGTTTACGGTTAAGACTACGACGGTA 102 ||||||| |||||||| ||||| |||| |||||| ||||||| Sbjct 42 GATCCCTGGTCGGCATCGTTTATGGTTGAGACTAGGACGGTA 1 >seq58141 Length=461 Score = 75.2 bits (82), Expect = 6e-12 Identities = 66/80 (83%), Gaps = 2/80 (3%) Strand=Plus/Plus Query 1 GAACCCAAAGACTTTGATTTCTCGTAAGGTGCCGAGC-GAGTCAAAATGATAACATCGCC 59 ||||||||| ||||||||||||| ||||||||| ||| ||||| || ||||||| | Sbjct 383 GAACCCAAAAACTTTGATTTCTCATAAGGTGCC-AGCGGAGTCCTAAAAGTAACATCCGC 441 Query 60 CGATCCCTAGTCGGCATAGT 79 ||||||| |||||||| || Sbjct 442 TGATCCCTGGTCGGCATCGT 461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 277877470170