Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq67308 158 2e-36 seq63799 120 6e-25 seq184358 102 1e-19 seq179722 75.2 2e-11 seq175938 73.4 7e-11 >seq67308 Length=556 Score = 158 bits (174), Expect = 2e-36 Identities = 185/249 (74%), Gaps = 17/249 (7%) Strand=Plus/Minus Query 72 CTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTCGA-ATACATTAGCAT 130 || |||||||||| || |||||||| |||||||| |||| ||||| |||||| | ||| Sbjct 275 CTGTTACTTTGAACAAGTTAGAGTGCTCAAAGCAAGCCTATGCTCTTGATACATCAACAT 216 Query 131 GGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGAT 190 | || | | | |||| |||||| | ||| |||||||| Sbjct 215 AGGAT--------------TTCAATCTTATTCTGTTGGCCTTCGGGATTAGAGTAATGAT 170 Query 191 TAATAGGGATAGTCGGGGGTGTCAGTATTCA-ATTGTCAGAGGTGAAATTCTTGGATTTA 249 |||| |||||| | ||||| | ||||| || ||||||||||||||||||||||||| Sbjct 169 TAATGGGGATACTTGGGGGCATTCGTATTTTCATAGTCAGAGGTGAAATTCTTGGATTTA 110 Query 250 TTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAACGAA 309 | ||||| ||| ||||||||||| || |||||||||||||||||||||| ||||||| Sbjct 109 TGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCA-AGAACGAA 51 Query 310 AGTTAGGGG 318 |||| |||| Sbjct 50 AGTTGGGGG 42 >seq63799 Length=517 Score = 120 bits (132), Expect = 6e-25 Identities = 127/165 (77%), Gaps = 2/165 (1%) Strand=Plus/Minus Query 119 ATACATTAGCATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGAC 178 |||||||||||||| |||| | |||||| | || | ||||| |||||| | ||| Sbjct 507 ATACATTAGCATGGGATAACACCATAGGATTT-CGATCCTATTCTGTTGGCCTTCGGGAT 449 Query 179 CGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAAT 238 || ||||||||||| ||||| ||||||||| | ||||| || |||||||||||||| Sbjct 448 CGGAGTAATGATTAACAGGGACAGTCGGGGGCATTCGTATTTCATAGTCAGAGGTGAAAT 389 Query 239 TCTTGGATTTATTGAAG-ACTAACTACTGCGAAAGCGTTCACCAA 282 |||||||||||| ||| | ||| | ||| ||||| || |||| Sbjct 388 TCTTGGATTTATGAAAGAAAAAACAATTGCAAAAGCATTTGCCAA 344 >seq184358 Length=6430 Score = 102 bits (112), Expect = 1e-19 Identities = 103/130 (79%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 81 TGAAAAAATTAGAGTGTTCAAAGCAGGCCTTTGCTC-GAATACATTAGCATGGAATAATA 139 |||| ||||||||||| |||||||| |||| |||| | |||||||||||||| |||| | Sbjct 6430 TGAAGAAATTAGAGTGCTCAAAGCAAGCCTACGCTCTGGATACATTAGCATGGGATAACA 6371 Query 140 GAATAGGACGTGCGGTTCTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGA 199 |||||| | || | ||||| |||||| | ||| || ||||||||||| ||||| Sbjct 6370 CCATAGGA-TTTCGATCCTATTCTGTTGGCCTTCGGGATCG-GGTAATGATTAACAGGGA 6313 Query 200 TAGTCGGGGG 209 ||||||||| Sbjct 6312 CAGTCGGGGG 6303 >seq179722 Length=5500 Score = 75.2 bits (82), Expect = 2e-11 Identities = 69/86 (80%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 233 TGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTC 292 ||||||| ||| |||||| ||||| ||| ||||||||||| | ||| |||||||| Sbjct 4432 TGAAATTTTTGAATTTATAAAAGACGAACAACTGCGAAAGCAATTGTCAATGATGTTTTT 4373 Query 293 ATTAATCAGTGAACGAAAGTTAGGGG 318 |||||||| |||| |||||| |||| Sbjct 4372 ATTAATCA-AGAACAAAAGTTGGGGG 4348 >seq175938 Length=4931 Score = 73.4 bits (80), Expect = 7e-11 Identities = 79/105 (75%), Gaps = 0/105 (0%) Strand=Plus/Plus Query 157 CTATTTTGTTGGTTTCTAGGACCGCCGTAATGATTAATAGGGATAGTCGGGGGTGTCAGT 216 ||||| ||||||| | | | || ||||||||||| ||||| ||| || | | | Sbjct 2352 CTATTCTGTTGGTCTTCGGAATCGGAGTAATGATTAACAGGGACAGTTGGAGACATTCAT 2411 Query 217 ATTCAATTGTCAGAGGTGAAATTCTTGGATTTATTGAAGACTAAC 261 ||| || ||||||||||||||||||| |||||| ||||| ||| Sbjct 2412 ATTTCATAGTCAGAGGTGAAATTCTTGAATTTATGAAAGACGAAC 2456 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 913367742144