Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq24384 307 4e-81 seq109152 212 3e-52 seq149224 156 2e-35 seq102836 156 2e-35 seq193254 129 2e-27 seq155706 118 4e-24 seq156793 114 5e-23 seq156570 111 7e-22 seq28676 107 8e-21 seq168924 100 1e-18 seq74642 95.1 5e-17 seq155590 75.2 5e-11 >seq24384 Length=284 Score = 307 bits (340), Expect = 4e-81 Identities = 188/201 (94%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 23 TGTGAAGCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 82 ||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 68 TGTAAATCTCCTTCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAAT 127 Query 83 TTCTTCTAAAGCT--------AAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGA 134 ||||||||||||| ||||||||||||||||||||||||||||||||||||||| Sbjct 128 TTCTTCTAAAGCTAAATAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGA 187 Query 135 TCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGG 194 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 188 TCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGG 247 Query 195 AAGCGCTTGCAACCAGACTTG 215 |||||||||||| |||| || Sbjct 248 AAGCGCTTGCAATAAGACCTG 268 >seq109152 Length=1233 Score = 212 bits (234), Expect = 3e-52 Identities = 213/271 (79%), Gaps = 8/271 (3%) Strand=Plus/Plus Query 418 AACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTC-AAACCCGTGCG-CG 475 ||||||||||||||||||| |||| | ||||||| ||| | |||||||| | || Sbjct 458 AACACGGACCAAGGAGTCTGACATGTGTGCGAGTCAACGGGCGAGTAAACCCGTAAGGCG 517 Query 476 TAATGAAAGTGAACGGAGGTGGGAACCCGT--GAGGGT-GCACCATCGACCGATCCTGAT 532 || ||| ||| || ||||| ||| | | |||| ||||| ||||||| | |||| Sbjct 518 CAAGGAAGCTGATTGG---TGGGATCCCCTCCGCGGGTTGCACCGCCGACCGACCTTGAT 574 Query 533 GTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATG 592 | | || || || |||| |||||| |||| ||||||||||||||||||||||||| Sbjct 575 CTTCTGAGAAGGGTTCGAGTGTGAGCATGCCTGTCGGGACCCGAAAGATGGTGAACTATG 634 Query 593 CCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCA 652 ||||| ||| ||||||||||||||||||||||||||| ||||||| | ||| |||||| Sbjct 635 CCTGAGCGGGGCGAAGCCAGAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCA 694 Query 653 AATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||||| ||||| | |||||||||||||||| Sbjct 695 AATCGTTCGTCTGACTTGGGTATAGGGGCGA 725 Score = 77.0 bits (84), Expect = 1e-11 Identities = 68/85 (80%), Gaps = 0/85 (0%) Strand=Plus/Plus Query 115 ATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGC 174 ||||| ||||||| | || ||||||||||||| |||||| ||||||||| ||| || Sbjct 1 ATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTTGAAAAGAGAGTCAAAGAGT 60 Query 175 ACGTGAAATTGTTGAAAGGGAAGCG 199 | ||||||||| | ||||||||| Sbjct 61 GCTTGAAATTGTCGGGAGGGAAGCG 85 >seq149224 Length=2655 Score = 156 bits (172), Expect = 2e-35 Identities = 133/164 (81%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 69 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 128 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||||||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 129 TAAATATTGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 188 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGC 198 || ||||||||| ||| || | |||||| || |||||||| Sbjct 189 TGAAAAGAGAGTCAAAGAGTGCTTGAAATAGTCAGGAGGGAAGC 232 >seq102836 Length=1094 Score = 156 bits (172), Expect = 2e-35 Identities = 134/165 (81%), Gaps = 2/165 (1%) Strand=Plus/Plus Query 35 TCGACGAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGC 94 ||| ||||||| |||||||||||||||||| | || ||| |||||||| | || || || Sbjct 673 TCGGCGAGTCGGGTTGTTTGGGAATGCAGCCCCAATCGGGCGGTAAATTCCGTCCAAGGC 732 Query 95 TAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTT 154 ||||||||||| ||||||||||||| ||||||| | || ||||||||||||| |||| Sbjct 733 TAAATATTGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTT 792 Query 155 TGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 || ||||||||| | || | ||||||||| | ||||||||| Sbjct 793 TGAAAAGAGAGT--CAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 835 >seq193254 Length=9810 Score = 129 bits (142), Expect = 2e-27 Identities = 206/295 (70%), Gaps = 27/295 (9%) Strand=Plus/Minus Query 405 CGGCCCGTCTTGGAACACGGACCAAGGAGTCTAACATCTATGCGAGTGTTTGGGTGTCAA 464 |||| ||| ||| ||||||||||||||||||| || | | ||| ||| || Sbjct 611 CGGCTCGTTTTGAAACACGGACCAAGGAGTCTGACTTGTGTGCAAGT-----------AA 563 Query 465 ACCCGTGCG-CGTAATGAAAGTGAAC----GGA--------GGTGGGAACCCGT--GAGG 509 |||||| | | | | ||| |||| ||| |||| || ||| | | || Sbjct 562 ACCCGTAAGGCATGAAGAAGCTGAATAGTGGGAAGCTGATTGGTGAGATCCCATTTGTGG 503 Query 510 GTG-CACCATCGACCGATCCTGATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTG 568 || ||| |||||||| | |||| | | || | | ||||| |||||| || | | Sbjct 502 GTTTCACTGTCGACCGACCTTGATCTTCTAAGAAAGGTCTGAGTGTGAGCATGCCTATCG 443 Query 569 GGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGA 628 ||||||||||||||||||||||||| ||| ||| ||||||| |||||||||| ||||| Sbjct 442 GGACCCGAAAGATGGTGAACTATGCTTGAGCAGGACGAAGCCAAAGGAAACTCTAGTGGA 383 Query 629 GGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 ||| |||| | | | |||||||||| ||||| | || ||||||| ||||| Sbjct 382 GGCCTGCAGTGATATTAATGTGCAAATCGTTCGTCTGACTTAGGTATAGAGGCGA 328 Score = 100 bits (110), Expect = 1e-18 Identities = 96/123 (78%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 77 GTAAATTTCTTCTAAAGCTAAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATC 136 ||||||| |||| || ||||||||||||| ||| |||||||| ||||||| || Sbjct 953 GTAAATTCCTTCCAAGGCTAAATATTGGCGAGATACCGATAGAAAACAAGTACCACGAGG 894 Query 137 GAAAGATGAAAAGCACTTTGGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAA 196 |||||||||||| |||||| ||||||||| | | || || ||||||||| |||| | Sbjct 893 GAAAGATGAAAATGACTTTGAAAAGAGAGTCACATAGTACTTGAAATTGTCAGGAGGGTA 834 Query 197 GCG 199 ||| Sbjct 833 GCG 831 >seq155706 Length=3039 Score = 118 bits (130), Expect = 4e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 576 AAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGC 635 |||||| ||||||||||||||| ||| ||||||||||| ||| |||||||||| || Sbjct 1620 AAAGATAGTGAACTATGCCTGAGCGGGGCAAAGCCAGAGGATACTTTGGTGGAGGCATGC 1679 Query 636 AGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 |||| | ||| ||||||||||| ||||| | |||||||||||||||| Sbjct 1680 AGCGATACTGACGTGCAAATCGTTCGTCTGACTTGGGTATAGGGGCGA 1727 >seq156793 Length=3112 Score = 114 bits (126), Expect = 5e-23 Identities = 151/208 (73%), Gaps = 5/208 (2%) Strand=Plus/Plus Query 473 GCGTAATGAAAGTGAACGGAGGTGGGAACCCGTGAGGG--TGCACCATCGACCGATCCTG 530 |||||| |||| ||| || ||||| ||| | | || |||||| |||||||| | || Sbjct 2440 GCGTAAGGAAATTGATTGG---TGGGATCCCCTAATGGGTTGCACCGTCGACCGACCTTG 2496 Query 531 ATGTCTTCGGATGGATTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTA 590 || | || | | || ||| |||||| |||| |||||||||||||||| ||||| Sbjct 2497 ATTTGTTTAGCAAGGTTCAAGTGTGAGCATGCTTGTTAGGACCCGAAAGATGGTAAACTA 2556 Query 591 TGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTG 650 || | | ||| ||||| |||||||| |||||||||| |||| || | || ||| Sbjct 2557 TGTATAAGCGGGGCGAAGCTAGAGGAAAATCTGGTGGAGATCCGCAACGATATTGATGTG 2616 Query 651 CAAATCGATCGTCAAATTTGGGTATAGG 678 ||||||| | ||| |||| ||||||| Sbjct 2617 CAAATCGTTTGTCTTATTTTTGTATAGG 2644 >seq156570 Length=3097 Score = 111 bits (122), Expect = 7e-22 Identities = 105/134 (78%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 546 TTTGAGTAAGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTG 605 || |||| |||||| || ||| ||||| |||||||||||||||||| ||| | || | Sbjct 267 TTCGAGTGTGAGCATGCCTTTTGCGACCCAAAAGATGGTGAACTATGCTTGAGCAAGGCG 208 Query 606 AAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAA 665 |||| ||||||||| ||||||||||| | || || | ||| ||| |||||| || || Sbjct 207 AAGCTAGAGGAAACACTGGTGGAGGCCCACAACGATACTGATGTGTAAATCGTTCATCTG 148 Query 666 ATTTGGGTATAGGG 679 | ||||| |||||| Sbjct 147 ACTTGGGCATAGGG 134 >seq28676 Length=296 Score = 107 bits (118), Expect = 8e-21 Identities = 86/104 (83%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 96 AAATATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTT 155 |||||||||| ||||||||||||| ||||||| | || ||||||||||||| ||||| Sbjct 296 AAATATTGGCGAGAGACCGATAGCAAACAAGTACCGCGAGGGAAAGATGAAAAGGACTTT 237 Query 156 GGAAAGAGAGTTAAAAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | ||||||||| ||| || | ||||||||| | ||||||||| Sbjct 236 GAAAAGAGAGTCAAAGAGTGCTTGAAATTGTCGGGAGGGAAGCG 193 >seq168924 Length=4105 Score = 100 bits (110), Expect = 1e-18 Identities = 112/150 (75%), Gaps = 0/150 (0%) Strand=Plus/Minus Query 50 GTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAATATTGGCCAGA 109 ||||||||||||||| | || ||| |||| || | || || |||||||| ||| ||| Sbjct 1790 GTTTGGGAATGCAGCCCCAATCGGGCGGTAGATCCCGTCCAAGGCTAAATAGTGGTGAGA 1731 Query 110 GACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAAAGAGAGTTAA 169 |||||||||| ||| || | | ||||||||||||| |||||| |||||| | ||| Sbjct 1730 GACCGATAGCAACCAATTACCGCAAGGGAAAGATGAAAAGAACTTTGAAAAGAGTGGTAA 1671 Query 170 AAAGCACGTGAAATTGTTGAAAGGGAAGCG 199 | || | |||| || | ||||||||| Sbjct 1670 AGAGTGCTTGAAGTTATCTGGAGGGAAGCG 1641 >seq74642 Length=641 Score = 95.1 bits (104), Expect = 5e-17 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 612 GAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGG 671 |||||||||||||||||||| ||||||| | ||| ||||||||||| ||||| | |||| Sbjct 1 GAGGAAACTCTGGTGGAGGCCCGCAGCGATACTGACGTGCAAATCGTTCGTCTGACTTGG 60 Query 672 GTATAGGGGCGA 683 |||||||||||| Sbjct 61 GTATAGGGGCGA 72 >seq155590 Length=3031 Score = 75.2 bits (82), Expect = 5e-11 Identities = 65/81 (80%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 603 GTGAAGCCAGAGGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGT 662 || ||||||||||||||||| |||||||| | |||| | || | ||||||||| || | Sbjct 1933 GTCAAGCCAGAGGAAACTCTTGTGGAGGCCCAGAGCGATAATGACATGCAAATCGTTCAT 1874 Query 663 CAAATTTGGGTATAGGGGCGA 683 | | ||||||||||||| || Sbjct 1873 CTTACTTGGGTATAGGGGTGA 1853 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2075705645650