Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq199398 241 3e-61 seq198221 197 3e-48 seq198403 179 9e-43 seq197877 172 1e-40 seq197926 147 5e-33 seq191388 120 8e-25 seq199933 116 9e-24 seq197983 114 3e-23 seq191682 105 2e-20 seq197805 82.4 2e-13 seq198489 80.6 7e-13 seq198010 80.6 7e-13 >seq199398 Length=3331 Score = 241 bits (266), Expect = 3e-61 Identities = 302/415 (73%), Gaps = 26/415 (6%) Strand=Plus/Plus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | |||||||||| | || ||||||||||| | ||| | |||||||||| || Sbjct 990 TACTCCGCATCTTCACGGAGAATTCAATTTCACCGGGTCCATGTCGGAGACAGCGGGGCA 1049 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 1050 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 1109 Query 127 CCGTTATTGTTACGGCCGCCGTTTACC-GGGGCTTCGATCAAGAGCTTCGCGTTAGCTAA 185 | |||| ||||| ||||||||||||| |||||||| || | ||||| ||| Sbjct 1110 CAGTTAGAGTTACTGCCGCCGTTTACCGGGGGCTTCCATTCAAAGCTT--------ATAA 1161 Query 186 CCCCATCAATTA--ACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCG 243 | | ||| ||| ||| |||||||||||| |||| || |||||| || || | Sbjct 1162 CACTTCTCCTTACGACCCTCCAGCACCGGGCAGGTGTCAGACTCTATACATCGTGTTACC 1221 Query 244 TGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACCGGC 303 || ||||||| ||||||||||||||||||||||| | |||||||| | | | | Sbjct 1222 ACTTAGCAGAGTCCTGTGTTTTTAATAAACAGTCGCTACCCCCTGGTATGTGCCGCTTTC 1281 Query 304 ATGAGCTTACGGAGCAAGTCCTTCACCCTCACCGGCGCACCTTCTCCCGAAGTTACGGTG 363 | | | | || || |||| ||||||||||||||||||| | Sbjct 1282 CTAATCAAA---AGATAGGAGAGCACC------------CCTTCTCCCGAAGTTACGGGG 1326 Query 364 CCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCGCCTTGGTATTCTCTAC 418 | ||||||| ||||||||| | ||||||||||||||| | |||| |||||| Sbjct 1327 TCATTTTGCCGAGTTCCTTCGACATGGTTCTCTCAAGCGCCCTAGTATACTCTAC 1381 >seq198221 Length=3577 Score = 197 bits (218), Expect = 3e-48 Identities = 213/282 (76%), Gaps = 4/282 (1%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || |||||| ||| ||| ||||||| ||| |||||| Sbjct 8 GCATCTTCACAGACATGTCTCTTTCACCGAGCCTCTTTACGAGACAGTGCCCAGATCGTT 67 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 || || |||||| |||| ||||||||||||||| |||||||||||||||||||||||| Sbjct 68 ACACCTTTCGTGTTGGTCAGAACTTACCCGACAATAAATTTCGCTACCTTAGGACCGTTA 127 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT----TCGCGTTAGCTAACCC 188 | ||||||||||||||| |||||||||||| || ||| | | | || | ||| Sbjct 128 TAGTTACGGCCGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCA 187 Query 189 CATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTT 248 | || |||||||||||| |||||||| ||| ||| ||| | ||| || ||| Sbjct 188 ACTTCCTTGACCTTCCGGCACTGGGCAGGCATCAGCCCCCGTACATGGTCTTACGACTTT 247 Query 249 GCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGT 290 |||||| |||||| ||| ||||||||||| | |||||| Sbjct 248 GCAGAGACCTGTGTGTTTGGTAAACAGTCGCCCGGACCTGGT 289 >seq198403 Length=5490 Score = 179 bits (198), Expect = 9e-43 Identities = 220/294 (75%), Gaps = 10/294 (3%) Strand=Plus/Minus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| |||| |||||| Sbjct 1667 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCTGAGACAGTGCCGAGATCGTT 1608 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 | ||| |||||| |||| |||||||| |||||| |||||||||||||||||||| |||| Sbjct 1607 ATGCCTTTCGTGTTGGTCAGAACTTACTCGACAATGAATTTCGCTACCTTAGGACGGTTA 1548 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCT-TCG-CGTTAGCTAACCCCA 190 | |||||||||| ||| |||||||||||| | ||| ||| | | || | | ||| Sbjct 1547 TAGTTACGGCCGTTGTTCACCGGGGCTTCGGTTGCCGGCTCTCGTCATCAGGT--CACCA 1490 Query 191 TCA--ATTAACCTTCCGGCACCGGGCAGGCGTC--ACACCCTATACGTCCACTTTCGTGT 246 || || ||||||| |||| |||||||| || | || |||| | ||| || | Sbjct 1489 ACAGTCTTGACCTTCCAGCACTGGGCAGGCATCGGCCTCCGTATA--TGGTCTTACGACT 1432 Query 247 TTGCAGAGTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 |||| ||| |||||||||| |||| |||||| || ||||| || ||||| Sbjct 1431 TTGCGGAGACCTGTGTTTTTGGTAAATAGTCGCTCAGGACTGGTCACTGCGACC 1378 >seq197877 Length=1212 Score = 172 bits (190), Expect = 1e-40 Identities = 127/148 (86%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 1065 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 1124 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTA 132 ||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||| Sbjct 1125 ACGCCTTTCGTGCTGGTCGGAACTTACCCGACAATAAATTTCGCTACCTTAGGACCGTTA 1184 Query 133 TTGTTACGGCCGCCGTTTACCGGGGCTT 160 | ||||||||||||||| |||||||||| Sbjct 1185 TAGTTACGGCCGCCGTTCACCGGGGCTT 1212 >seq197926 Length=1467 Score = 147 bits (162), Expect = 5e-33 Identities = 92/99 (93%), Gaps = 0/99 (0%) Strand=Plus/Minus Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||||||| ||||||| |||||||||||||||||||| |||||||||||||||||| Sbjct 1465 ATCGTTACGCCTTTCGTGCTGGTCGGAACTTACCCGACAATAAATTTCGCTACCTTAGGA 1406 Query 127 CCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATC 165 ||||||| ||||||||||||||| |||||||||||| || Sbjct 1405 CCGTTATAGTTACGGCCGCCGTTCACCGGGGCTTCGGTC 1367 >seq191388 Length=8740 Score = 120 bits (132), Expect = 8e-25 Identities = 110/139 (79%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 7 TACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCC 66 ||| | ||||||||| | | ||||||||||| | ||| | |||||||| || Sbjct 4994 TACTCCGCATCTTCAAGGACAATTCAATTTCACCGGGTCCAAGTCCGAGACAGCAGGGCA 4935 Query 67 ATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGA 126 ||||||| |||||||||||||||| ||||| |||||||||||||||||||||||||| Sbjct 4934 GTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAGGA 4875 Query 127 CCGTTATTGTTACGGCCGC 145 | ||||| |||| ||||| Sbjct 4874 CAGTTATAGTTATTGCCGC 4856 >seq199933 Length=8665 Score = 116 bits (128), Expect = 9e-24 Identities = 116/148 (78%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 18 TTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTACGCC 77 || |||| | ||||||||||||| ||| | |||||| || || ||||||| || Sbjct 7625 TTAACAGAAAATTCAATTTCACTGGGTCCATATTAGAGACAACGG-GCAGTCGTTACACC 7683 Query 78 ATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTTATTGTT 137 |||||| ||||| ||||| | ||||||||||||||||||||||||| |||| ||| Sbjct 7684 ATTCGTAAAGGTCTCTACTTATGCAACAAGGAATTTCGCTACCTTAGGACAGTTAGAGTT 7743 Query 138 ACGGCCGCCGTTTACC-GGGGCTTCGAT 164 || ||| ||||||||| |||||||| || Sbjct 7744 ACTGCCACCGTTTACCGGGGGCTTCCAT 7771 >seq197983 Length=1807 Score = 114 bits (126), Expect = 3e-23 Identities = 89/106 (84%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 13 GCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTT 72 |||||||||||| || || ||||||| ||| ||| ||||||| ||| |||||| Sbjct 1123 GCATCTTCACAGACATGTCTATTTCACCGAGCCTCTCTCCGAGACAGTGCCCAGATCGTT 1182 Query 73 ACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTA 118 ||||| ||||||| |||||||||||||||||||||||||||||||| Sbjct 1183 ACGCCTTTCGTGCTGGTCGGAACTTACCCGACAAGGAATTTCGCTA 1228 >seq191682 Length=8879 Score = 105 bits (116), Expect = 2e-20 Identities = 190/270 (70%), Gaps = 11/270 (4%) Strand=Plus/Minus Query 14 CATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCGCCGCCATCGTTA 73 ||||||||||| || ||||||||||| ||| | ||||||||| | | | ||| Sbjct 6341 CATCTTCACAGAGAATTCAATTTCACCAGGTCCATGTTGGAGACAGTGGGGTAGTTGTTT 6282 Query 74 CGCCATTCGTGCAGGTCGGAAC-TTACCCGAC-AAGGAATTTCGCTACCTTAGGACCGTT 131 | |||||||||||||||| | ||| |||| | |||||||||||| ||||||| ||| Sbjct 6281 CACCATTCGTGCAGGTCGCTGCTTTATGCGACTACGGAATTTCGCTAACTTAGGATAGTT 6222 Query 132 ATTGTTACGGCCGCCGTTTACC-GGGGCTTCGATCAAGAGCTTCGCGTTAGCTAACCCCA 190 | ||||| ||| || |||||| |||||||| | | || | | || ||| Sbjct 6221 AGAGTTACAGCCACCATTTACCTGGGGCTTCCCTTCAAAG--TTATAAAAACTTCTCCCT 6164 Query 191 TCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGC 250 | || | ||| ||||||||| || |||| || ||||| || || | ||| || Sbjct 6163 ACGAT----CCTCCAGCACCGGGCTGGTGTCAGACTTTATACATCGTATTACCAGTTAGC 6108 Query 251 AGAGTGCTG-TGTTTTTAATAAACAGTCGC 279 | ||| ||| |||||||||||| ||| || Sbjct 6107 AAAGT-CTGACGTTTTTAATAAATAGTAGC 6079 >seq197805 Length=844 Score = 82.4 bits (90), Expect = 2e-13 Identities = 72/90 (80%), Gaps = 0/90 (0%) Strand=Plus/Minus Query 337 GGCGCACCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCT 396 ||| | ||||||||||||||||||| || ||||||| |||||||| ||||| ||| Sbjct 143 GGCACCCCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCT 84 Query 397 CAAGCGCCTTGGTATTCTCTACCCAACCAC 426 | || ||| ||||||||||||| | |||| Sbjct 83 CGCGCCCCTAGGTATTCTCTACCTACCCAC 54 >seq198489 Length=6656 Score = 80.6 bits (88), Expect = 7e-13 Identities = 118/167 (71%), Gaps = 4/167 (2%) Strand=Plus/Minus Query 138 ACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTT----AGCTAACCCCATCA 193 || || |||||| |||||||||||| || ||| | | | || | ||| | Sbjct 173 ACAGCTGCCGTTCACCGGGGCTTCGGTCGCCGGCTCCCCTGTCATCAGGTCACCAACTTC 114 Query 194 ATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTTCGTGTTTGCAGA 253 || |||||||||||| |||||||| ||| ||| ||| | ||| || ||||| || Sbjct 113 CTTGACCTTCCGGCACTGGGCAGGCATCAGCCCCCGTACATGGTCTTACGACTTTGCGGA 54 Query 254 GTGCTGTGTTTTTAATAAACAGTCGCAGCGGCCTGGTATCTTCGACC 300 | |||||||||| ||||||||||| |||||||| || ||||| Sbjct 53 GACCTGTGTTTTTGGTAAACAGTCGCCCGGGCCTGGTCACTGCGACC 7 >seq198010 Length=1989 Score = 80.6 bits (88), Expect = 7e-13 Identities = 68/84 (81%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 ||||||||||||||||||| || ||||||| |||||||| ||||| |||| || Sbjct 1819 CCTTCTCCCGAAGTTACGGGGCTATTTTGCCGAGTTCCTTAGAGAGAGTTGTCTCGCGCC 1878 Query 403 CCTTGGTATTCTCTACCCAACCAC 426 ||| ||||||||||||| | |||| Sbjct 1879 CCTAGGTATTCTCTACCTACCCAC 1902 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1258275840576