Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01000811.1 Length=502 Score E Sequences producing significant alignments: (Bits) Value seq198301 224 3e-56 seq197828 215 2e-53 seq198620 168 2e-39 seq190552 149 2e-33 seq198700 125 2e-26 seq197627 123 7e-26 seq198066 120 9e-25 seq136959 102 2e-19 seq75602 87.8 5e-15 seq159557 77.0 1e-11 seq164873 75.2 3e-11 >seq198301 Length=4382 Score = 224 bits (248), Expect = 3e-56 Identities = 189/232 (81%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 199 GGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCAC 258 ||||||||||||||||||||||||||||| | |||||||||||| || |||| || || Sbjct 3833 GGGTTAAGTCCCGCAACGAGCGCAACCCTCGTGTTTAGTTGCCATCGTTGAGTTTGGAAC 3892 Query 259 TCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGC 318 || | |||||||||||| || ||||||||||||| ||| |||||||| ||||||||| Sbjct 3893 CCTGAACAGACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGACGTCAAGTCATCATGC 3952 Query 319 CCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGC 378 |||||||| ||||| |||||||||||||||||| | |||||||| |||| |||| Sbjct 3953 CCCTTATGCCCTGGGCGACACACGTGCTACAATGGTCGGGACAAAGGGTTGCGATCCCGC 4012 Query 379 GAGGTCAAGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAA 430 |||| ||| || ||| ||| || |||||||||||||| || |||||| Sbjct 4013 GAGGGTTAGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAA 4064 Score = 100 bits (110), Expect = 9e-19 Identities = 90/112 (80%), Gaps = 1/112 (1%) Strand=Plus/Plus Query 386 AGCAAATCCCATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAG 445 ||| || ||| ||| || |||||||||||||| || |||||||||| || |||||| Sbjct 4136 AGCTAACTCCAAAAACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCATGAAG 4195 Query 446 CTGGAATCGCTAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 | ||||||||||||||||| | |||| ||| | |||||||| |||||||| Sbjct 4196 CCGGAATCGCTAGTAATCGCCGGTCAGCCATACGGCGGTGAATTCGTTCCCG 4247 >seq197828 Length=979 Score = 215 bits (238), Expect = 2e-53 Identities = 181/220 (82%), Gaps = 3/220 (1%) Strand=Plus/Minus Query 172 TGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAG 231 ||||||||||||||| ||| || ||||||||||||||||||||||||||||||||| | Sbjct 966 TGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTCGTG 907 Query 232 CTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAA 291 |||||||||||| || |||| || || || | |||||||||||| || ||||||||| Sbjct 906 TTTAGTTGCCATCGTTGAGTTTGGAACCCTGAACAGACTGCCGGTGATAAGCCGGAGGAA 847 Query 292 GGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAAT 351 |||| ||| |||||||| ||| ||||||||||||| ||||| ||||||||||||||| Sbjct 846 GGTGAGGATGACGTCAAGTCA-CATGCCCCTTATGCCCTGGGC--CACACGTGCTACAAT 790 Query 352 GGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAA 391 || | |||||||| || || | |||||| | || ||| Sbjct 789 GGTCGGGACAAAGGGTAGAGACCCTGCGAGGGCGAGAAAA 750 >seq198620 Length=9816 Score = 168 bits (186), Expect = 2e-39 Identities = 244/342 (71%), Gaps = 2/342 (1%) Strand=Plus/Minus Query 156 ACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAAC 215 ||| ||| ||||||| ||||| || |||||| || || |||||||||||||||| ||| Sbjct 6376 ACAAGTGTTGCATGGCTGTCGGCAACTCGTGCTGTAAGGTGTTGGGTTAAGTCCCTTAAC 6317 Query 216 GAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAAGTTGACTGCCGG 275 ||| ||| | | | |||||| ||||||| || || ||| ||| | ||| || Sbjct 6316 AAGCTCAATCATCATTTGTAGTTGTCATCATTGCATTTGGAACTTTAACAGGT-TGCTGG 6258 Query 276 TGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATGATTTGGGCT 335 ||| || |||||||| |||| ||| || ||||| ||||| ||| | | ||| || || Sbjct 6257 TGATAAGCCGGAGGATGGTGAGGATGATGTCAAGTCATCGTGCTCGTCATGCCCTGAGCA 6198 Query 336 ACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCC 395 || ||| ||||| ||||| ||||||| || | | || | | ||| || | Sbjct 6197 ACTCACATGCTAAAATGGTTGGGACAAAGGTTTGCTATCTTGTGATGGCTAGCTAACTCT 6138 Query 396 ATAAAGTTGTTCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGC 455 | ||| ||| || ||||||||||| || |||||||| | | ||||||| ||||||| Sbjct 6137 AAAAACCTGTCCTTAGTTCGGATTGCAGGCTGCAACTTGCTTGCATGAAGCCAGAATCGC 6078 Query 456 TAGTAATCGTAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 ||||||||| |||| ||| | |||||| | | |||||| Sbjct 6077 TAGTAATCGCCAGTCAGCCATACGGCGGTGATTTCATTCCCG 6036 >seq190552 Length=8361 Score = 149 bits (164), Expect = 2e-33 Identities = 99/110 (90%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAACTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCAT 60 |||| |||||| |||||||||||||||||||||||| ||||||||||||||||||||| Sbjct 8318 TACGTTCGCAAGAATGAAACTCAAAGGAATTGACGGGGGCCCGCACAAGCGGTGGAGCAT 8259 Query 61 GTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACATCCT 110 |||||||||||||| |||| |||||||||||||||| |||||||| || Sbjct 8258 GTGGTTTAATTCGATGCAAAGCGAAGAACCTTACCAGGGCTTGACATACT 8209 >seq198700 Length=14723 Score = 125 bits (138), Expect = 2e-26 Identities = 137/180 (76%), Gaps = 8/180 (4%) Strand=Plus/Minus Query 28 AATTGACGGGGACCCGCACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGA 87 ||||||||||| | ||||| | ||||||| |||||||||||||| |||| ||||||| Sbjct 3332 AATTGACGGGGGGGTGAACAAGAGATGGAGCACGTGGTTTAATTCGATGCAAAGCGAAGA 3273 Query 88 ACCTTACCAAATCTTGACATCCTCTGACCCCTCTAGAGATAGAGGTTTCCCCTTCGGGGG 147 | |||| |||||||| | || ||||| || | || ||| |||||||| Sbjct 3272 A----ACCAGGGCTTGACATGCCGCGAATCCTCTTGAAAGAGGGGTG---CCTTCGGGA- 3221 Query 148 ACAGAGTGACAGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGT 207 || | ||||||| ||||||| ||||||||||||||| ||| || ||||||||||||| Sbjct 3220 ACGCGGACACAGGTGGTGCATGGCTGTCGTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGT 3161 >seq197627 Length=219 Score = 123 bits (136), Expect = 7e-26 Identities = 97/116 (84%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 267 GACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATCATCATGCCCCTTATG 326 |||||||||||| || ||||||||||||| ||| || ||||||||||||||||||||||| Sbjct 2 GACTGCCGGTGATAAGCCGGAGGAAGGTGAGGATGATGTCAAATCATCATGCCCCTTATG 61 Query 327 ATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCGAAACCGCGAGG 382 ||||| | |||||||||||||||| | |||||||| | || |||||||| Sbjct 62 CCCTGGGCGATACACGTGCTACAATGGCCGGGACAAAGGGTCGTGATCCCGCGAGG 117 >seq198066 Length=2414 Score = 120 bits (132), Expect = 9e-25 Identities = 164/227 (72%), Gaps = 4/227 (2%) Strand=Plus/Minus Query 192 AGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGT 251 || |||||||||||||||| ||||||| ||||| || | ||||||||||| || ||| Sbjct 1242 AGTTGTTGGGTTAAGTCCCACAACGAGTGCAACGCTAGTGTTTAGTTGCCATTGTTTAGT 1183 Query 252 TGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGACGACGTCAAATC 311 | || || | | | ||||| | || || | |||||||||| || | ||||| || Sbjct 1182 TTGGAACCTTGAACAGGCTGCCAGCGATAAGCTGGAGGAAGGT---GATGGTGTCAAGTC 1126 Query 312 ATCATGCCCCTTATGATTTGGGCTACACACGTGCTACAATGGACAATACAAAGGGCAGCG 371 |||||||||||| || | || |||| |||||||||||| | |||||||| || Sbjct 1125 ATCATGCCCCTTGTGCCCTTGGTGGCACATGTGCTACAATGGTCGGGACAAAGGGTCTCG 1066 Query 372 AAACCGCGAGGTCAAGC-AAATCCCATAAAGTTGTTCTCAGTTCGGA 417 | |||| ||| ||| | ||| | ||| |||||| ||||| || Sbjct 1065 ATCCCGCCAGGGTGAGCTAGCTCCAAAAAAACTGTTCTTAGTTCAGA 1019 >seq136959 Length=2090 Score = 102 bits (112), Expect = 2e-19 Identities = 89/108 (82%), Gaps = 2/108 (2%) Strand=Plus/Minus Query 1 TACGACCGCAAGGTTGAAA-CTCAAAGGAATTGACGGGGACCCGCACAAGCGGTGGAGCA 59 || || |||||| ||||| ||||| || |||||||||| || ||| |||||||||| || Sbjct 671 TATGATCGCAAGACTGAAAACTCAAGGGCATTGACGGGG-CCTGCAGAAGCGGTGGAACA 613 Query 60 TGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAAATCTTGACAT 107 ||||||||||||| | |||| || | ||||||||||| |||||||| Sbjct 612 TGTGGTTTAATTCAATACAACACGCAAAACCTTACCAATCCTTGACAT 565 >seq75602 Length=653 Score = 87.8 bits (96), Expect = 5e-15 Identities = 84/108 (78%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 192 AGATGTTGGGTTAAGTCCCGCAACGAGCGCAACCCTTAAGCTTAGTTGCCATCATTAAGT 251 || |||||||||||||||| ||||||| ||||| || | |||||||||||| || ||| Sbjct 544 AGTTGTTGGGTTAAGTCCCACAACGAGTGCAACGCTAGTGTTTAGTTGCCATCGTTTAGT 603 Query 252 TGGGCACTCTAAGTTGACTGCCGGTGACAAACCGGAGGAAGGTGGGGA 299 | | || | | |||||||||||| || | |||||||| || ||| Sbjct 604 TTAGAACCTTGAACAGACTGCCGGTGATAAGCTGGAGGAAGCTGAGGA 651 >seq159557 Length=3305 Score = 77.0 bits (84), Expect = 1e-11 Identities = 111/153 (73%), Gaps = 3/153 (2%) Strand=Plus/Minus Query 346 TACAATGGACAATACAAAGGGCAGCGAAACCGCGAGGTCAAGCAAATCCCATAAAGTTGT 405 ||||||| | |||||||| || | |||||| ||| || || ||| ||| Sbjct 1436 TACAATGCTCGGGACAAAGGGTTGCTATCTTGCGAGGGGTAGCTAACTTCAAAAACCTGT 1377 Query 406 TCTCAGTTCGGATTGTAGTCTGCAACTCGACTATATGAAGCTGGAATCGCTAGTAATCG- 464 || ||||||||||| | |||||||||| || ||||| | |||| ||||||||||| Sbjct 1376 CCTTAGTTCGGATTGCGGGCTGCAACTCGCCTGCATGAACCCAGAATTGCTAGTAATCGC 1317 Query 465 TAGATCAG-CATGCTACGGTGAATACGTTCCCG 496 |||| ||| ||| | |||||||| | |||||| Sbjct 1316 TAGA-CAGCCATACGGCGGTGAATTCATTCCCG 1285 >seq164873 Length=3729 Score = 75.2 bits (82), Expect = 3e-11 Identities = 80/106 (75%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 158 AGGTGATGCATGGTTGTCGTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTCCCGCAACGA 217 |||| || |||| || | || ||| ||| || || |||||||||||||| | |||||| Sbjct 2036 AGGTAGTGAATGGCTGCCATCGGCTTGTGCTGTAAGGTGTTGGGTTAAGTCTCCCAACGA 2095 Query 218 GCGCAACCCTTAAGCTTAGTTGCCATCATTAAGTTGGGCACTCTAA 263 || ||||||| | | | ||||||||| || |||| || | |||| Sbjct 2096 GCCCAACCCTCATGTCTTGTTGCCATCGTTGAGTTTGGAATCCTAA 2141 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1500988946880