Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq185858 242 6e-62 seq199139 241 2e-61 seq168455 183 5e-44 seq47778 181 2e-43 seq106074 165 1e-38 seq149216 161 2e-37 seq89404 123 4e-26 seq200031 120 5e-25 seq169758 118 2e-24 seq126514 93.3 7e-17 seq86128 87.8 3e-15 >seq185858 Length=6796 Score = 242 bits (268), Expect = 6e-62 Identities = 202/246 (82%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||| ||| ||| ||||||||||||||||||||| ||| | Sbjct 1175 ACTCGTTGAATACATCAGTGTATTTCGCATGCAGCCCAGAACATCTAAGGGCATTACAAA 1116 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 |||||||||||||||||||| ||| | ||| ||| | || || |||||||||||| ||| Sbjct 1115 CCTGTTATTGCCTCAAACTTTCATGGCCTGAAAGGCCATGGTTCCTCTAAGAAGCTAGCT 1056 Query 122 ACCAACCATAGTCGATGG--GGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 |||| ||| | || ||||| || ||||| |||| |||||||||||| |||||| Sbjct 1055 GCCAAGCATTACCTCTGCATGGCTAGTTGGCAGGCTAAGATCTCGTTCGTTAATGGAATT 996 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||| |||| ||||||||||| |||||||||||||||| ||||||||||| Sbjct 995 AACCAGACAAATAGCTCCTCCAACTAAGAATGGCCATGCACCACCACTCATAGAATCAAT 936 Query 240 AAAGAG 245 |||||| Sbjct 935 AAAGAG 930 >seq199139 Length=1910 Score = 241 bits (266), Expect = 2e-61 Identities = 210/259 (81%), Gaps = 3/259 (1%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||| |||||||||||||||||||||||||||| ||||||||| | Sbjct 83 ACTCGTTGAATACATCAGT-TAGCGCGCGTGCGGCCCAGAACATCTAACGGCATCACAAA 141 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGCC 121 | |||||||||||||||||||||| | ||| ||| | ||||||||| |||||||| || Sbjct 142 CATGTTATTGCCTCAAACTTCCATGGCCTGAAAGACCATAGTCCCTTTAAGAAGCTAGTT 201 Query 122 ACCAACCAT--AGTCGATGGGGCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATT 179 ||| | || | |||| |||||||| |||||||| |||||||| ||||| Sbjct 202 GTCAAGGGTTACCTCCACATAGCTAGTTAGCAGGCTAAGGTCTTGTTCGTTAATAGAATT 261 Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 || |||||||| |||||||||||||||| ||||||||| |||||||||| ||||||| Sbjct 262 AATTAGACAAATTGCTCCACCAACTAAGAATTGCCATGCACGACCACCCATAAAATCAAG 321 Query 240 AAAGAGCTATCAATCTGTC 258 ||||| |||||| | |||| Sbjct 322 AAAGAACTATCAGTTTGTC 340 >seq168455 Length=4060 Score = 183 bits (202), Expect = 5e-44 Identities = 142/168 (85%), Gaps = 2/168 (1%) Strand=Plus/Minus Query 93 AAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--TCGATGGGGCTATTTAGC 150 ||| | |||||||||||||||||| || ||| | || | |||| ||||| Sbjct 2963 AAGGCCATAGTCCCTCTAAGAAGCTAGTTGTCAAGGGTTACCTCCAGATAGCTAGTTAGC 2904 Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210 ||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 2903 AGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAAC 2844 Query 211 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 2843 GGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 2796 >seq47778 Length=375 Score = 181 bits (200), Expect = 2e-43 Identities = 111/118 (94%), Gaps = 0/118 (0%) Strand=Plus/Minus Query 141 GCTATTTAGCAGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACC 200 |||| |||||||| | ||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 352 GCTAGTTAGCAGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACC 293 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 292 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTCTCAGTCTGTC 235 >seq106074 Length=1164 Score = 165 bits (182), Expect = 1e-38 Identities = 127/150 (85%), Gaps = 2/150 (1%) Strand=Plus/Plus Query 93 AAGCCAATAGTCCCTCTAAGAAGCCAGCCACCAACCATAG--TCGATGGGGCTATTTAGC 150 ||| | |||||||||||||||||| ||| | | | |||| |||| ||||| Sbjct 1 AAGGCCATAGTCCCTCTAAGAAGCTAGCTGTCGAGGGTTACCTCGACATAGCTAGTTAGC 60 Query 151 AGGTTAAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCACTCCACCAACTAAGAAC 210 ||| | ||||||||||||||| |||||||||||||||||||| ||||||||||||||||| Sbjct 61 AGGCTGAGGTCTCGTTCGTTAACGGAATTAACCAGACAAATCGCTCCACCAACTAAGAAC 120 Query 211 GGCCATGCACCACCACCCATAGAATCAAGA 240 |||||||||||||||||||||||||||||| Sbjct 121 GGCCATGCACCACCACCCATAGAATCAAGA 150 >seq149216 Length=2654 Score = 161 bits (178), Expect = 2e-37 Identities = 107/119 (90%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2516 ACTCGTTGAATACATCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 2575 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAGC 120 |||||||||||||||||||||| | | ||| ||| | |||||||||||||||||| ||| Sbjct 2576 CCTGTTATTGCCTCAAACTTCCGTGGCCTGAAAGGCCATAGTCCCTCTAAGAAGCTAGC 2634 >seq89404 Length=849 Score = 123 bits (136), Expect = 4e-26 Identities = 89/103 (86%), Gaps = 0/103 (0%) Strand=Plus/Plus Query 2 ACTCGGTGGCTCCGTCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGA 61 ||||| || | | ||||||||||||||||| |||| ||||||||||||||||||||||| Sbjct 11 ACTCGTTGAATACATCAGTGTAGCGCGCGTGTGGCCTAGAACATCTAAGGGCATCACAGA 70 Query 62 CCTGTTATTGCCTCAAACTTCCATTGGCTGGAAGCCAATAGTC 104 |||||||||||||||||||| | | | ||| ||| | |||||| Sbjct 71 CCTGTTATTGCCTCAAACTTTCGTGGCCTGAAAGGCCATAGTC 113 >seq200031 Length=10744 Score = 120 bits (132), Expect = 5e-25 Identities = 89/104 (86%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 |||||||||||||||||||| ||||||||||||||||||||||| |||| |||||||| | Sbjct 6747 TCAGTGTAGCGCGCGTGCGGTCCAGAACATCTAAGGGCATCACAAACCTATTATTGCCCC 6688 Query 76 AAACTTCCATTGGCTGGAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||| |||| | | || ||| | ||| |||||||||| ||| || Sbjct 6687 AAATTTCCGTGGACTAAAAGGCCATATTCCCTCTAAGGAGCTAG 6644 >seq169758 Length=4193 Score = 118 bits (130), Expect = 2e-24 Identities = 67/68 (99%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 52 TCAGTGTAGCGCGCGTGCGGCCCAGAATATCTAAGGGCATCACAGACCTGTTATTGCCTC 111 Query 76 AAACTTCC 83 |||||||| Sbjct 112 AAACTTCC 119 >seq126514 Length=1715 Score = 93.3 bits (102), Expect = 7e-17 Identities = 75/88 (85%), Gaps = 2/88 (2%) Strand=Plus/Plus Query 32 GCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTCCATTGGCTG 91 |||||| |||||||||||||| || |||||||| ||||||||||||||||| || ||| Sbjct 1579 GCGGCCTAGAACATCTAAGGGTATAACAGACCT-ATATTGCCTCAAACTTCC-TTCCCTG 1636 Query 92 GAAGCCAATAGTCCCTCTAAGAAGCCAG 119 ||| | ||||||||| |||||||| || Sbjct 1637 AAAGGCCATAGTCCCTATAAGAAGCTAG 1664 >seq86128 Length=798 Score = 87.8 bits (96), Expect = 3e-15 Identities = 59/66 (89%), Gaps = 0/66 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTC 75 ||||||||| | | | | | ||||||||||||||||||||||||||| |||||||||||| Sbjct 194 TCAGTGTAGTGAGTGAGTGACCCAGAACATCTAAGGGCATCACAGACTTGTTATTGCCTC 135 Query 76 AAACTT 81 |||||| Sbjct 134 AAACTT 129 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795254633043