Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq193809 268 2e-69 seq170340 266 6e-69 seq98102 224 2e-56 seq50858 217 3e-54 seq100127 215 9e-54 seq142125 214 3e-53 seq170833 190 3e-46 seq238 152 9e-35 seq101646 127 3e-27 seq182998 102 1e-19 seq93306 102 1e-19 seq151105 98.7 2e-18 seq59780 98.7 2e-18 seq184327 87.8 3e-15 seq4324 77.0 6e-12 >seq193809 Length=10238 Score = 268 bits (296), Expect = 2e-69 Identities = 208/250 (83%), Gaps = 17/250 (7%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | | ||||||||||| |||||||||||||||||| Sbjct 10004 TACTAGGTTGAATTACTATTGTGAC-ATTGTCATCAGTAGAGTAAAACTAACCTGTCTCG 10062 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 |||||||||||||||||||| ||||||| || ||| |||||||||||||| ||| || Sbjct 10063 CGACGGTCTAAACCCAGCTCATGTTCCCTGTTGGTGAGTGAACAATCCAACACTTGGTGA 10122 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTAT 180 |||||||||| || ||||||||||||||||||||||||||||| Sbjct 10123 ATTCTGCTTCAAAAT----------------ATCGAAGGATCAAAAAGCAACGTCGCTAT 10166 Query 181 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCT 240 ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| | Sbjct 10167 GAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTT 10226 Query 241 CAAATTTCGA 250 |||||| ||| Sbjct 10227 CAAATTCCGA 10236 >seq170340 Length=4255 Score = 266 bits (294), Expect = 6e-69 Identities = 162/172 (94%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 72 ACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCG 131 ||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||| Sbjct 1473 ACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCA 1414 Query 132 GTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 191 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1413 CAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGC 1354 Query 192 TGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAA 243 |||||||||||||||||||||||||||||||||||| |||||||||| |||| Sbjct 1353 TGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAA 1302 Score = 168 bits (186), Expect = 1e-39 Identities = 122/140 (87%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 1679 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 1621 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||| ||| ||| || Sbjct 1620 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCAAACACTTGGTGA 1561 Query 121 ATTCTGCTTCGGTATGATAG 140 |||||||||| ||||||| Sbjct 1560 ATTCTGCTTCACAATGATAG 1541 >seq98102 Length=1001 Score = 224 bits (248), Expect = 2e-56 Identities = 212/266 (80%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 27 ACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTC 86 || || || ||||||||||||||||||||||| |||||| | ||||| | |||| || | Sbjct 453 ACTGTTATTAGTAGGGTAAAACTAACCTGTCTTGTGACGGACAAAACC-ATCTCAAGT-C 396 Query 87 CCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAG 146 |||| ||||||| ||||||| | || ||| |||||||| ||| |||||| |||||| Sbjct 395 CCTACTAGTGGGGGAACAATTCTACACTTTGTGAATTCTGTTTCACGATGATACGAAGAG 336 Query 147 CCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 |||| | ||||||| ||||| ||| |||||||||||| |||| ||||||||||| ||| Sbjct 335 TCGACGTTGAAGGATAAAAAAACAATGTCGCTATGAACTTTTGGTTGCCACAAGCCTGTT 276 Query 207 ATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGA 266 | || ||||||||||||||| || |||| || |||||| || || |||||||| | Sbjct 275 ACCCATGTGGTAACTTTTCTAGCTCCTCGAG---CAAATTCTGAAGGTTTAAAGGATTGT 219 Query 267 TAGGCCACACTTTCATGGTTTGTATT 292 ||||| | ||||||| ||| ||||| Sbjct 218 TAGGCAATACTTTCA-CGTTCGTATT 194 >seq50858 Length=399 Score = 217 bits (240), Expect = 3e-54 Identities = 137/147 (93%), Gaps = 1/147 (1%) Strand=Plus/Minus Query 25 CGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGT 84 ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||| Sbjct 146 CGACG-TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGT 88 Query 85 TCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAG 144 |||||||| |||||||||||||||||| ||| |||||||||||| ||||||||||| Sbjct 87 TCCCTATTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAG 28 Query 145 AGCCGACATCGAAGGATCAAAAAGCAA 171 ||||||||||||||||||||||||||| Sbjct 27 AGCCGACATCGAAGGATCAAAAAGCAA 1 >seq100127 Length=1040 Score = 215 bits (238), Expect = 9e-54 Identities = 133/142 (94%), Gaps = 0/142 (0%) Strand=Plus/Minus Query 152 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 211 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1040 ATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCC 981 Query 212 TGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGC 271 |||||||||||||||| |||||||||| ||||||| ||| || ||||||||||| ||||| Sbjct 980 TGTGGTAACTTTTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGTTAGGC 921 Query 272 CACACTTTCATGGTTTGTATTC 293 ||| |||||| |||| |||||| Sbjct 920 CACGCTTTCACGGTTCGTATTC 899 Score = 87.8 bits (96), Expect = 3e-15 Identities = 62/71 (87%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 223 TTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCAT 282 ||||| |||||||||| ||||||| ||| || ||||||||||| |||||||| |||||| Sbjct 559 TTCTGACACCTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCAC 500 Query 283 GGTTTGTATTC 293 |||| |||||| Sbjct 499 GGTTCGTATTC 489 >seq142125 Length=2308 Score = 214 bits (236), Expect = 3e-53 Identities = 132/141 (94%), Gaps = 0/141 (0%) Strand=Plus/Minus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 2308 TCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 2249 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 || |||||||||||||||||| ||| |||||||||||| ||||||||||||||||| Sbjct 2248 TTGGTGGGTGAACAATCCAACACTTGGTGAATTCTGCTTCACAATGATAGGAAGAGCCGA 2189 Query 151 CATCGAAGGATCAAAAAGCAA 171 ||||||||||||||||||||| Sbjct 2188 CATCGAAGGATCAAAAAGCAA 2168 >seq170833 Length=4307 Score = 190 bits (210), Expect = 3e-46 Identities = 148/174 (85%), Gaps = 8/174 (5%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACGGTCATCAGTAGGGTAAAACTAACCTGTCTCA 60 ||||| | ||||||| |||| | | || ||||||||||||||||||||||||||||||| Sbjct 4295 TACTAGGTTGAATTACTATTGCGAC-ACTGTCATCAGTAGGGTAAAACTAACCTGTCTCA 4237 Query 61 TGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGA 120 ||||||||||||||||||||||||||||||| |||||||||||||||||| ||| || Sbjct 4236 CGACGGTCTAAACCCAGCTCACGTTCCCTATTGGTGGGTGAACAATCCAACACTTGGTGA 4177 Query 121 ATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGT 174 | ||| || |||||||||||| ||||||||||||| ||||||||||| Sbjct 4176 A------TTCACAATCATAGGAAGAGCCAACATCGAAGGATC-AAAAGCAACGT 4130 >seq238 Length=201 Score = 152 bits (168), Expect = 9e-35 Identities = 98/107 (92%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 41 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCTAGCTTCAAATT 100 Query 247 TCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| || ||||||||||| |||||||| |||||| |||| |||||| Sbjct 101 CCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTATTC 147 >seq101646 Length=1071 Score = 127 bits (140), Expect = 3e-27 Identities = 85/95 (89%), Gaps = 0/95 (0%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||| ||||||||||||||| |||||||||| || |||||||||||||||||||| | Sbjct 95 GTCATCAATAGGGTAAAACTAACTTGTCTCATGATGGACTAAACCCAGCTCACGTTCCTT 36 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTC 124 ||| |||||||||||||||||| ||| |||||| Sbjct 35 ATTGGTGGGTGAACAATCCAACACTTGGTGAATTC 1 >seq182998 Length=6128 Score = 102 bits (112), Expect = 1e-19 Identities = 72/81 (89%), Gaps = 1/81 (1%) Strand=Plus/Minus Query 148 CGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCC-AGTT 206 ||||||| ||||||||||| ||||| || |||||||||||||||||||||||||| |||| Sbjct 715 CGACATCAAAGGATCAAAAGGCAACATCACTATGAACGCTTGGCTGCCACAAGCCAAGTT 656 Query 207 ATCCCTGTGGTAACTTTTCTG 227 || ||| ||| ||||||| || Sbjct 655 ATTCCTATGGCAACTTTTTTG 635 >seq93306 Length=914 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Plus Query 41 GGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTG 100 |||||||||||||||||||| |||||| |||| ||| |||||| |||||||| ||||||| Sbjct 1 GGTAAAACTAACCTGTCTCAAGACGGTATAAAACCAACTCACGCTCCCTATTGGTGGGTG 60 Query 101 AACAATCCAAC 111 ||||||||||| Sbjct 61 AACAATCCAAC 71 >seq151105 Length=2761 Score = 98.7 bits (108), Expect = 2e-18 Identities = 57/59 (97%), Gaps = 0/59 (0%) Strand=Plus/Plus Query 135 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTG 193 ||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| Sbjct 1 TGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAATGTCGCTATGAGCGCTTGGCTG 59 >seq59780 Length=477 Score = 98.7 bits (108), Expect = 2e-18 Identities = 65/72 (90%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAG 269 ||| |||||||||||||| |||||||| | ||||||||||| || ||||||||||| ||| Sbjct 252 CCTATGGTAACTTTTCTGACACCTCTAACTTCAAATTTCGAAGGTCTAAAGGATCGTTAG 193 Query 270 GCCACACTTTCA 281 |||||||||||| Sbjct 192 GCCACACTTTCA 181 >seq184327 Length=6422 Score = 87.8 bits (96), Expect = 3e-15 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 34 TCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 ||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||| Sbjct 6212 TCAGTAGGGTAAAACTAACCTATCTCACGACGGTCTAAACCCAACTCACGTTCCCT 6157 >seq4324 Length=214 Score = 77.0 bits (84), Expect = 6e-12 Identities = 54/62 (87%), Gaps = 0/62 (0%) Strand=Plus/Minus Query 232 CTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 ||||||| ||||||| ||| || ||||||||||| |||||||| |||||| |||| |||| Sbjct 214 CTCTAGCTTCAAATTCCGAAGGTCTAAAGGATCGTTAGGCCACGCTTTCACGGTTCGTAT 155 Query 292 TC 293 || Sbjct 154 TC 153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852689465568