Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01001083.1 Length=339 Score E Sequences producing significant alignments: (Bits) Value seq198139 161 2e-37 seq198630 143 5e-32 seq199398 111 3e-22 seq198275 109 1e-21 seq199428 78.8 2e-12 >seq198139 Length=2929 Score = 161 bits (178), Expect = 2e-37 Identities = 157/202 (78%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 138 TGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGCGCCCAAAGATACCCTCAGCTTGGATGG 197 ||||||| ||||||||| |||||||||| | ||||| | |||| | ||| || Sbjct 2721 TGGGGCGTAGACCTCCCAAAAGGTAACGGAGGTGTGCAAAGGTTTCCTCGGTCCGGACGG 2780 Query 198 AAACCATGCGCACAGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGC 257 | | | || |||| ||||||| ||||| | |||||||| | |||| | ||| ||| Sbjct 2781 AGATCGGGCCGCGAGTGTAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGC 2840 Query 258 AGGGACGAAAGTCGGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACG 317 ||||||||||||||| |||| ||||||| |||||| || ||||| ||||||||||| ||| Sbjct 2841 AGGGACGAAAGTCGGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACG 2900 Query 318 GATAAAAGCTACCCTGGGGATA 339 |||||||| ||| || |||||| Sbjct 2901 GATAAAAGTTACTCTAGGGATA 2922 >seq198630 Length=10121 Score = 143 bits (158), Expect = 5e-32 Identities = 109/129 (84%), Gaps = 0/129 (0%) Strand=Plus/Plus Query 211 AGTGCAAAGGCAAAAGGGTGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTC 270 |||| ||||||| ||||| | |||||||| | |||| | ||| |||||||||||||||| Sbjct 9971 AGTGTAAAGGCAGAAGGGAGCTTGACTGCAAGACCCACCCGTCGAGCAGGGACGAAAGTC 10030 Query 271 GGGCTTAATGATCCGGCGGTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACC 330 || |||| ||||||| |||||| || ||||| ||||||||||| ||||||||||| ||| Sbjct 10031 GGCCTTAGTGATCCGACGGTGCCGAGTGGAAGGGCCGTCGCTCAACGGATAAAAGTTACT 10090 Query 331 CTGGGGATA 339 || |||||| Sbjct 10091 CTAGGGATA 10099 >seq199398 Length=3331 Score = 111 bits (122), Expect = 3e-22 Identities = 164/231 (71%), Gaps = 6/231 (3%) Strand=Plus/Minus Query 110 CGGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGG 169 ||||||| || || ||| ||||| ||||||||| |||||| ||||||||||||||| Sbjct 821 CGGGACACTGCGAGGTGGGTAGTTTATCTGGGGCGGATGCCTCCTAAAGAGTAACGGAGG 762 Query 170 CGCCCAAAGATACCCTCA-GCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGG 228 || | ||| || |||| ||| ||| | || || | || || | ||| Sbjct 761 CGTGCGAAGGTAGGCTCAAGCTAAGATTCTGCTCGTGAGC-----GTAATGGTATAAGCC 707 Query 229 TGTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCG 288 || |||||| || ||| | ||| | ||| |||||||||||| | || |||||||| Sbjct 706 TGCCTGACTGTGAGACCGACTGGTCGAACAGAGACGAAAGTCGGCCATAGTGATCCGGGA 647 Query 289 GTGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 || | | ||||| ||| |||||| |||||| |||| ||| | ||||||| Sbjct 646 GTCCCGTGTGGAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 596 >seq198275 Length=4085 Score = 109 bits (120), Expect = 1e-21 Identities = 150/207 (72%), Gaps = 2/207 (1%) Strand=Plus/Plus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||||| |||| | |||||| ||||||| ||||||||| |||||||||| Sbjct 6 GGGACAGTCTCAGGTAGACAGTTTCTATGGGGCGTAGACCTCCCAAAAGGTAACGGAGGT 65 Query 171 GCCCAAAGATACCCTCAGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGTG 230 | ||||| | |||| | ||| ||| | | || |||| ||||||| ||||| | Sbjct 66 GTGCAAAGGTTTCCTCGGTCCGGACGGAGATCGGGCCGCGAGTGTAAAGGCAGAAGGGAG 125 Query 231 TTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGGT 290 |||||||| | |||| | || |||||||||||||||| | |||| ||||||| || Sbjct 126 CTTGACTGCAAGACCCACCC-TCGAGCAGGGACGAAAGTC-GCCTTAGTGATCCGATGGA 183 Query 291 GCTGAATGGAACGGCCGTCGCTCGACG 317 || || | || ||||||| ||| ||| Sbjct 184 GCCGAGAGAAAGGGCCGTCACTCAACG 210 >seq199428 Length=3508 Score = 78.8 bits (86), Expect = 2e-12 Identities = 156/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Minus Query 111 GGGACAGTGTCAGTCGGGCAGTTTGACTGGGGCGGTCGCCTCCCAAAGAGTAACGGAGGC 170 |||||| | | || ||| ||||| ||||||||| | |||| ||||||||||| ||| Sbjct 576 GGGACACTATGAGGTGGGTAGTTTATCTGGGGCGGATGTCTCCTAAAGAGTAACGAAGGT 517 Query 171 GCCCAAAGATACCCTC-AGCTTGGATGGAAACCATGCGCACAGTGCAAAGGCAAAAGGGT 229 | ||| || ||| |||| ||| |||| || | || || | ||| | Sbjct 516 GTGTGAAGGTAGGCTCAAGCTAAGATTTTGCTCATG-----AGCGTAATGGTATAAGCTT 462 Query 230 GTTTGACTGCGACACCCTCAAGTCTAGCAGGGACGAAAGTCGGGCTTAATGATCCGGCGG 289 | ||| || || ||| | ||| | ||| ||| ||||| || | || |||||||| | Sbjct 461 GCCTGATTGTGAGACCAACTGGTCGAACAGAGACTAAAGTTGGCCATAGTGATCCGGGAG 402 Query 290 TGCTGAATGGAACGGCCGTCGCTCGACGGATAAAAGCTACCCTGGGGATA 339 | | | || || ||| |||||| |||||| |||| ||| | ||||||| Sbjct 401 TCCCGTGTGTAAGGGCTCTCGCTCAACGGATCAAAGGTACGCCGGGGATA 352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 980433205728