Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01001138.1 Length=202 Score E Sequences producing significant alignments: (Bits) Value seq199398 107 2e-21 seq191388 98.7 1e-18 seq197877 93.3 5e-17 seq197983 87.8 2e-15 seq197926 87.8 2e-15 seq198221 84.2 2e-14 seq198403 73.4 4e-11 >seq199398 Length=3331 Score = 107 bits (118), Expect = 2e-21 Identities = 112/151 (74%), Gaps = 0/151 (0%) Strand=Plus/Plus Query 23 CGGGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTG 82 ||||||||| |||| || |||| || |||||||||| || | | ||||||||| | Sbjct 965 CGGGGTCTTACCGTCTAGCCGTTGGTACTCCGCATCTTCACGGAGAATTCAATTTCACCG 1024 Query 83 AGCTCACGGTTGAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCC 142 | || | ||||||| |||||||||||||||||||| ||||| | Sbjct 1025 GGTCCATGTCGGAGACAGCGGGGCAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGC 1084 Query 143 GACAAGGAATTTCGCTACCTTAGGACCGTTA 173 |||||||||||||||||||||||||| |||| Sbjct 1085 GACAAGGAATTTCGCTACCTTAGGACAGTTA 1115 >seq191388 Length=8740 Score = 98.7 bits (108), Expect = 1e-18 Identities = 96/128 (75%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 46 GGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTTGAGACAGNNNNN 105 |||| || ||||||||| || | | ||||||||| | | || | ||||||| Sbjct 4996 GGTACTCCGCATCTTCAAGGACAATTCAATTTCACCGGGTCCAAGTCCGAGACAGCAGGG 4937 Query 106 NNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAG 165 |||||||||||||||||||| ||||| |||||||||||||||||||||||| Sbjct 4936 CAGTCGTTACACCATTCGTGCAGGTCGCTACTTATGCGACAAGGAATTTCGCTACCTTAG 4877 Query 166 GACCGTTA 173 ||| |||| Sbjct 4876 GACAGTTA 4869 >seq197877 Length=1212 Score = 93.3 bits (102), Expect = 5e-17 Identities = 99/132 (75%), Gaps = 2/132 (2%) Strand=Plus/Plus Query 43 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAGCTCACGGTT-GAGACAGN 101 || |||| || |||||||||| || | | ||||||| |||| | | | ||||||| Sbjct 1054 GCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCCGAGACAGT 1112 Query 102 NNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACC 161 ||| || ||||||| |||||||||||||||||||| |||||||||||| Sbjct 1113 GCCCAGATCGTTACGCCTTTCGTGCTGGTCGGAACTTACCCGACAATAAATTTCGCTACC 1172 Query 162 TTAGGACCGTTA 173 |||||||||||| Sbjct 1173 TTAGGACCGTTA 1184 >seq197983 Length=1807 Score = 87.8 bits (96), Expect = 2e-15 Identities = 100/136 (74%), Gaps = 2/136 (1%) Strand=Plus/Plus Query 25 GGGTCTTTTCGTCCCATCGCGGGTAATCGGCATCTTCACCGATACTACAATTTCACTGAG 84 ||||||||| |||| || |||| || |||||||||| || | | ||||||| ||| Sbjct 1094 GGGTCTTTTTGTCCAGGTGCAGGTAGTCCGCATCTTCACAGACATGTCTATTTCACCGAG 1153 Query 85 CTCACGGTT-GAGACAGNNNNNNNNNNNNTACACCATTCGTGCAGGTCGGAACTTACCCG 143 | | | | ||||||| ||| || ||||||| |||||||||||||||| Sbjct 1154 C-CTCTCTCCGAGACAGTGCCCAGATCGTTACGCCTTTCGTGCTGGTCGGAACTTACCCG 1212 Query 144 ACAAGGAATTTCGCTA 159 |||||||||||||||| Sbjct 1213 ACAAGGAATTTCGCTA 1228 >seq197926 Length=1467 Score = 87.8 bits (96), Expect = 2e-15 Identities = 56/61 (92%), Gaps = 0/61 (0%) Strand=Plus/Minus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 ||| || ||||||| |||||||||||||||||||| ||||||||||||||||||||||| Sbjct 1460 TACGCCTTTCGTGCTGGTCGGAACTTACCCGACAATAAATTTCGCTACCTTAGGACCGTT 1401 Query 173 A 173 | Sbjct 1400 A 1400 >seq198221 Length=3577 Score = 84.2 bits (92), Expect = 2e-14 Identities = 55/61 (90%), Gaps = 0/61 (0%) Strand=Plus/Plus Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 |||||| |||||| |||| ||||||||||||||| ||||||||||||||||||||||| Sbjct 67 TACACCTTTCGTGTTGGTCAGAACTTACCCGACAATAAATTTCGCTACCTTAGGACCGTT 126 Query 173 A 173 | Sbjct 127 A 127 >seq198403 Length=5490 Score = 73.4 bits (80), Expect = 4e-11 Identities = 88/121 (73%), Gaps = 2/121 (2%) Strand=Plus/Minus Query 54 GCATCTTCACCGATACTACAATTTCACTGAGCTCACGGT-TGAGACAGNNNNNNNNNNNN 112 |||||||||| || | | ||||||| |||| | | | |||||||| Sbjct 1667 GCATCTTCACAGACATGTCTATTTCACCGAGC-CTCTCTCTGAGACAGTGCCGAGATCGT 1609 Query 113 TACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGTT 172 || || |||||| |||| |||||||| |||||| |||||||||||||||||||| ||| Sbjct 1608 TATGCCTTTCGTGTTGGTCAGAACTTACTCGACAATGAATTTCGCTACCTTAGGACGGTT 1549 Query 173 A 173 | Sbjct 1548 A 1548 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546138723897