Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01001178.1 Length=367 Score E Sequences producing significant alignments: (Bits) Value seq184018 113 1e-22 seq198118 111 3e-22 seq189747 111 3e-22 seq197861 102 2e-19 seq194986 102 2e-19 seq177630 102 2e-19 seq145216 93.3 9e-17 seq113069 87.8 4e-15 seq188879 84.2 5e-14 seq150839 84.2 5e-14 seq132674 82.4 2e-13 seq186390 75.2 2e-11 seq157976 75.2 2e-11 >seq184018 Length=6353 Score = 113 bits (124), Expect = 1e-22 Identities = 102/125 (82%), Gaps = 4/125 (3%) Strand=Plus/Minus Query 1 CTTTACAATCCGAA--GACCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGC 58 |||||||| | | | | | ||||| || |||||| |||| ||||||||||||||||| Sbjct 123 CTTTACAAGCAGCATCGCCATTCTT-CAGTCACGCGATATTG-CTGGATCAGGCTTTCGC 66 Query 59 CCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 118 ||||||||||| |||| ||||||||| ||||| |||||| | |||||||||||| || Sbjct 65 CCATTGTCCAAGATTCATCACTGCTGCTCCCCGTGGGAGTCCAGGCCGTGTCTCAGTCCC 6 Query 119 AGTGT 123 ||||| Sbjct 5 AGTGT 1 >seq198118 Length=2786 Score = 111 bits (122), Expect = 3e-22 Identities = 98/121 (81%), Gaps = 1/121 (1%) Strand=Plus/Minus Query 44 GGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGA 103 || |||||||||||||||||| || ||||| ||| |||||||| |||| ||||| | Sbjct 2682 GGCTCAGGCTTTCGCCCATTGCAGAAAATTCCATACTACTGCCTCCTGTAGAAGTCTAGG 2623 Query 104 CCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTT 163 ||||||||| | ||||||||| ||||||||||||| ||| || || |||| | ||||| Sbjct 2622 TCGTGTCTCAATCCCAGTGTGATTGATCATCCTCTCGGACAAG-CACTGATCATAGCCTT 2564 Query 164 G 164 | Sbjct 2563 G 2563 >seq189747 Length=8024 Score = 111 bits (122), Expect = 3e-22 Identities = 122/161 (76%), Gaps = 5/161 (3%) Strand=Plus/Minus Query 54 TTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC----CCGTAGGAGTCTGGACCGTGT 109 || ||||||||||||| |||| ||||||||||| | | || |||||| || | ||| Sbjct 3492 TTTGCCCATTGTCCAAGATTCTCCACTGCTGCCCCGCGTCTGTTGGAGTCCGGGCTGTGA 3433 Query 110 CTCAGTTCC-AGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGTGA 168 |||||| || |||||| |||||||||| ||||||| || | ||| | ||||| | Sbjct 3432 CTCAGTCCCAAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCACAGTCTTGGCCA 3373 Query 169 GCCATTACCTCACCAACTAGCTAATCCGACCTAGGCTCATC 209 ||| |||||| |||||||| ||||| | | |||||| || Sbjct 3372 GCCTTTACCTGACCAACTAACTAATACTCCGAAGGCTCGTC 3332 >seq197861 Length=1138 Score = 102 bits (112), Expect = 2e-19 Identities = 103/133 (77%), Gaps = 1/133 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || || |||||| | | |||||||||||||||||| || ||| | ||| ||||||| Sbjct 971 CATGCAGCATTGCTTCG-TCAGGCTTTCGCCCATTGCAGAAAATTTCGTACTACTGCCTC 913 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTT 148 | |||||||||||| ||||||||| | |||||||| | |||||| |||| ||||| | Sbjct 912 CTGTAGGAGTCTGGGTCGTGTCTCAATCCCAGTGTGGTTAATCATCATCTCGAACCAGCT 853 Query 149 ACGGATCGTCGCC 161 || ||| | ||| Sbjct 852 ACTAATCATAGCC 840 >seq194986 Length=11426 Score = 102 bits (112), Expect = 2e-19 Identities = 83/97 (86%), Gaps = 3/97 (3%) Strand=Plus/Plus Query 24 TCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATT-GTCCAATATTCCCCACTGC 82 |||| |||||| |||| ||||||| ||||| | |||||| |||||| |||||||||| | Sbjct 107 TCACTCACGCGATATTG-CTGGATCGGGCTTCCCCCCATTTGTCCAAGATTCCCCACT-C 164 Query 83 TGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 119 |||| ||||| ||||||||||| |||||||||| ||| Sbjct 165 TGCCCCCCGTGGGAGTCTGGACTGTGTCTCAGTCCCA 201 >seq177630 Length=5178 Score = 102 bits (112), Expect = 2e-19 Identities = 94/118 (80%), Gaps = 6/118 (5%) Strand=Plus/Plus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 |||| ||||||| || |||||||||| |||| ||| | ||||||| |||||||||| Sbjct 4678 CACGTGGCATTG-CTCCATCAGGCTTTTGCCCTTTGCGGGAAATTCCCCCCTGCTGCCTC 4736 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAG 146 || ||||||||||| | | |||||||| ||| || |||||||||||| |||||| Sbjct 4737 CCATAGGAGTCTGGGCAGCGTCTCAGTCCCAATG-----GATCATCCTCTCCGACCAG 4789 >seq145216 Length=2450 Score = 93.3 bits (102), Expect = 9e-17 Identities = 77/93 (83%), Gaps = 1/93 (1%) Strand=Plus/Minus Query 43 TGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 102 ||||| |||||| || ||||||||| |||||||||||||||| ||| | ||||| ||| Sbjct 2404 TGGATTGGGCTTTTTCC-ATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTTTGG 2346 Query 103 ACCGTGTCTCAGTTCCAGTGTGACTGATCATCC 135 |||||||||||||||| || ||||||| || Sbjct 2345 GTCGTGTCTCAGTTCCAGAGTAGCTGATCAACC 2313 >seq113069 Length=1329 Score = 87.8 bits (96), Expect = 4e-15 Identities = 63/70 (90%), Gaps = 2/70 (3%) Strand=Plus/Plus Query 17 CCTTCTTTCACACACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCC 76 ||||||| ||| |||||| |||| ||||||||| |||||||||||||||||| |||||| Sbjct 511 CCTTCTT-CACTCACGCGATATTG-CTGGATCAGCCTTTCGCCCATTGTCCAAAATTCCC 568 Query 77 CACTGCTGCC 86 |||||||||| Sbjct 569 CACTGCTGCC 578 >seq188879 Length=7713 Score = 84.2 bits (92), Expect = 5e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 || ||| ||||| || ||||||||||||| ||| || ||| |||||||||| ||| Sbjct 3878 CATGCGACATTG-CTCTGTCAGGCTTTCGCCTTTTGCTGAAAATTTCCCACTGCTGTCTC 3820 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCT 136 ||||| |||||| | || | | |||||||| | || ||||||||||| Sbjct 3819 CCGTATGAGTCTCGGCCATATATCAGTTCCTCTATGGCTGATCATCCT 3772 >seq150839 Length=2746 Score = 84.2 bits (92), Expect = 5e-14 Identities = 106/147 (72%), Gaps = 8/147 (5%) Strand=Plus/Minus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 ||||||| | | |||||| || || ||||||| || |||| |||| | ||| | || Sbjct 422 TCAGGCTATTGTCCATTGAGGAAAATCCCCCACTACTACCTCATGTAGCATTCTAGGTCG 363 Query 107 TGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCAGTTACGGATCGTCGCCTTGGT 166 || || || ||||| || || ||||||||||| || |||| | ||||| || Sbjct 362 TGCCTTGGTCCCAGTATGGCTAATCATCCTCTCGAAC--------GATCATAGCCTTAGT 311 Query 167 GAGCCATTACCTCACCAACTAGCTAAT 193 ||| ||| |||||| ||||||||||| Sbjct 310 AAGCTATTGCCTCACAAACTAGCTAAT 284 >seq132674 Length=1927 Score = 82.4 bits (90), Expect = 2e-13 Identities = 104/141 (74%), Gaps = 4/141 (3%) Strand=Plus/Minus Query 29 CACGCGGCATTGGCTGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTC 88 ||||| |||||| || |||| ||||||||| ||| || ||||||||| | ||||| Sbjct 852 CACGCAGCATTG-CTCCATCACGCTTTCGCCATTTGCGAAAAATTCCCCACCGTTGCCTA 794 Query 89 CCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGACTGATCATCCTCTCAGACCA--- 145 ||| |||||||| |||||||||||||||||| | ||||| || ||| | | Sbjct 793 TTGTAAGAGTCTGGGTCGTGTCTCAGTTCCAGTGCTGTTTATCATTCTTCCAGTCTAGAT 734 Query 146 GTTACGGATCGTCGCCTTGGT 166 | ||| ||| |||| ||||| Sbjct 733 GATACTAATCATCGCTTTGGT 713 >seq186390 Length=6944 Score = 75.2 bits (82), Expect = 2e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 47 TCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCG 106 |||||||||| ||||| | || ||||||||||| |||||| | ||||||||||| | | Sbjct 1429 TCAGGCTTTCACCCATGGCGAAAAATTCCCCACTGTTGCCTCTCATAGGAGTCTGGCCTG 1488 Query 107 TGTCTCAGTTCCAGTGTGACTGAT 130 ||| ||| |||||| |||||| Sbjct 1489 TGTTTCAAACTCAGTGTAACTGAT 1512 >seq157976 Length=3193 Score = 75.2 bits (82), Expect = 2e-11 Identities = 64/78 (82%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 43 TGGATCAGGCTTTCGCCCATTGTCCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGG 102 || || | ||||||||| ||| ||||| || ||||| ||||||| ||||| ||||| ||| Sbjct 1794 TGTATTAAGCTTTCGCC-ATTCTCCAAGATCCCCCATTGCTGCCCCCCGTGGGAGTTTGG 1736 Query 103 ACCGTGTCTCAGTTCCAG 120 ||||||||||| |||| Sbjct 1735 GTCGTGTCTCAGTCCCAG 1718 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1069853823840