Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq199398 102 2e-19 seq198579 98.7 2e-18 seq197704 95.1 3e-17 seq198437 84.2 5e-14 seq198050 77.0 8e-12 >seq199398 Length=3331 Score = 102 bits (112), Expect = 2e-19 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Plus Query 255 ACTGCTTGTACGCATACGGTTTCAGGATCT--ATTTCACTCCCCTCTCCGGGGTTCTTTT 312 |||| |||| ||||| | | ||||| ||| ||| ||||||| | |||||||||| Sbjct 2669 ACTGATTGTTCGCATCGGATCTCAGGTTCTCTATTGCACTCCC-TAAATAGGGTTCTTTT 2727 Query 313 CGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAGCCTTGGAGG 372 | |||||||||||||||||| || | |||||||||| | || | || |||| ||| |||| Sbjct 2728 CACCTTTCCCTCACGGTACTTGTACGCTATCGGTCATTGAGGAATACTTAGGCTTAGAGG 2787 Query 373 ATGGTCCCCC 382 ||||||||| Sbjct 2788 GTGGTCCCCC 2797 >seq198579 Length=8338 Score = 98.7 bits (108), Expect = 2e-18 Identities = 93/119 (78%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 302 GGGGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTT 361 |||||||||||| || |||||||||||||||| ||| |||||||||| ||| ||||||| Sbjct 8186 GGGGTTCTTTTCACCCTTCCCTCACGGTACTACTTCGCTATCGGTCACCCAGGAGTATTT 8245 Query 362 AGCCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTCG 420 ||||||| | | |||||| | ||||| || || | |||| || | ||||||| Sbjct 8246 AGCCTTGCAAGGTGGTCCTTGCTGATTCACACGGGATTCCACGTGTCCCATGCTACTCG 8304 >seq197704 Length=386 Score = 95.1 bits (104), Expect = 3e-17 Identities = 172/238 (72%), Gaps = 14/238 (6%) Strand=Plus/Minus Query 64 TAGTT--ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATT 121 ||||| |||||| ||| || |||| ||| ||||||||| ||| | || |||||| || Sbjct 233 TAGTTTCACCCAAGCTT-CATCCTGGTCAT-GGATAGATCACCCAGGTT-CGGGTCCATA 177 Query 122 TCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCCCCTA--TTCGGT 179 | || ||| | |||||| |||||||||||| ||||||| |||| | ||| | Sbjct 176 AGC-AGTGACAATT-GCCCTATGAAGACTCGCTTT-CGCTACGGCTCCGGTGGGTTCCCT 120 Query 180 TAAGCTTTGCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA 239 ||| | ||||||| || |||||| | | |||| | ||| ||| |||| |||| | Sbjct 119 TAACCAA-GCCACTGCCTATGAGTCGCCGGCTCATTCTTCAACAGGCACGCGGTCAG--A 63 Query 240 ACAAAGTGGGC-TCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCC 296 | | | | |||||||||||| || |||||||||| | ||||||||||||||| Sbjct 62 GCCCCGGGCTCCTCCCACTGCTTGGGAGCTTACGGTTTCATGTTCTATTTCACTCCCC 5 >seq198437 Length=5921 Score = 84.2 bits (92), Expect = 5e-14 Identities = 84/108 (78%), Gaps = 1/108 (1%) Strand=Plus/Plus Query 250 CTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGGGGTTCT 309 |||||| |||||| || || |||||| | ||||||||||||| | | |||||||| Sbjct 5815 CTCCCATTGCTTGGGAGCTCACCGTTTCATGTTCTATTTCACTCCTCGATG-GGGGTTCT 5873 Query 310 TTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGT 357 |||| || ||||||||| ||| || ||| |||| ||||| ||| ||| Sbjct 5874 TTTCACCCTTCCCTCACAGTATTATTTCGCTATTGGTCACCCAGGAGT 5921 >seq198050 Length=2310 Score = 77.0 bits (84), Expect = 8e-12 Identities = 100/129 (78%), Gaps = 7/129 (5%) Strand=Plus/Minus Query 41 AGTCGGTTCGGTCCTCCAGTTAGTAGTTACCCAACCTTTCAACCTGCCCATAGGATAGAT 100 ||||||||||| |||||| ||||| | |||||| | |||| |||| ||| |||||||| Sbjct 1887 AGTCGGTTCGGACCTCCACTTAGT-TTCACCCAAGC-TTCATCCTGGTCAT-GGATAGAT 1831 Query 101 CGCCCGGTTTTCGGGTCTATTTCCCAGCGACTAGACGCCCTAGTAAGACTCGCTTTTCGC 160 | ||| | |||||||| | | ||| ||| | |||||| ||||||||| |||||| Sbjct 1830 CACCCAG-GTTCGGGTCCA-TAAGCAGTGAC-AATTGCCCTATGAAGACTCGC-TTTCGC 1775 Query 161 TACGCCTCC 169 |||| |||| Sbjct 1774 TACGGCTCC 1766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1239114279552