Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01001382.1 Length=124 Score E Sequences producing significant alignments: (Bits) Value seq111387 113 3e-23 seq191775 75.2 7e-12 seq186642 75.2 7e-12 seq175741 75.2 7e-12 >seq111387 Length=1287 Score = 113 bits (124), Expect = 3e-23 Identities = 103/124 (83%), Gaps = 6/124 (5%) Strand=Plus/Plus Query 1 AGCGACGTAGCCCCGTTCGCCGGGTCCACAAAGCCAATTCCGAAAGTTCTCACTAAGCCA 60 ||||||| | || || ||||| ||| ||||| |||| || |||| |||||||||||| Sbjct 1067 AGCGACGAGGTGCCATT-GCCGGCTCCCCAAAGACAATCCC--AAGTCCTCACTAAGCCA 1123 Query 61 TTTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCA 120 || || ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| Sbjct 1124 TT-CAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCG 1180 Query 121 AGCT 124 |||| Sbjct 1181 AGCT 1184 >seq191775 Length=8922 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 8780 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 8837 Query 122 GCT 124 ||| Sbjct 8838 GCT 8840 >seq186642 Length=7014 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Plus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 6903 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 6960 Query 122 GCT 124 ||| Sbjct 6961 GCT 6963 >seq175741 Length=4904 Score = 75.2 bits (82), Expect = 7e-12 Identities = 56/63 (89%), Gaps = 2/63 (3%) Strand=Plus/Minus Query 62 TTCATTCGGTAGTAAGCGACGGGCGGGGTGTACAAAGGGCAGGGACGTAATACAACGCAA 121 |||| ||||||| | ||||||||||| |||||||||||||||||||||| | |||||| | Sbjct 129 TTCAATCGGTAGGA-GCGACGGGCGGTGTGTACAAAGGGCAGGGACGTAGT-CAACGCGA 72 Query 122 GCT 124 ||| Sbjct 71 GCT 69 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 300235427540