Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01001752.1 Length=400 Score E Sequences producing significant alignments: (Bits) Value seq31360 228 2e-57 seq199398 167 5e-39 seq199128 141 2e-31 seq197945 111 4e-22 seq197829 98.7 2e-18 seq200111 93.3 1e-16 seq197947 93.3 1e-16 seq198179 77.0 8e-12 seq198518 75.2 3e-11 >seq31360 Length=303 Score = 228 bits (252), Expect = 2e-57 Identities = 188/226 (83%), Gaps = 6/226 (3%) Strand=Plus/Minus Query 1 CGACTACGCCTGTCGGCCTCGCCTTAGGACCCGACTCACCCAGGGCAGACAAACTTGACC 60 |||||||||||| ||||||||||||||| |||||||||||| ||| ||| | ||||||| Sbjct 228 CGACTACGCCTGACGGCCTCGCCTTAGGCCCCGACTCACCCTGGGAAGATTAGCTTGACC 169 Query 61 CTGGAACCCTTGGATAATC-GGCGGACGGGATTCCCACCCGTCACACGCTACTCATGCCT 119 |||||||||||| || ||| |||||| | ||| ||| | ||| |||||||||||||| Sbjct 168 CTGGAACCCTTG-ATCATCCGGCGGATACGTTTCTCACGCATCATTCGCTACTCATGCCT 110 Query 120 GCATTCTCACTCGCATCAACTCCACCACACAGTCACCCGGCAGCTTCACCACTGACACGA 179 |||||||||||||||| ||||||||| | |||| ||||||||||||| |||||| Sbjct 109 GCATTCTCACTCGCATAGCCTCCACCACTCGTTCACACGGCAGCTTCACCGGCCACACGA 50 Query 180 CGCTCCCCTACCCAACCACACA----GGTTGCCACAGCTTCGGCGG 221 |||||||||||||||| ||| | ||||||||| ||||||||| Sbjct 49 CGCTCCCCTACCCAACAACAAAACGCTGTTGCCACAACTTCGGCGG 4 >seq199398 Length=3331 Score = 167 bits (184), Expect = 5e-39 Identities = 153/192 (80%), Gaps = 6/192 (3%) Strand=Plus/Plus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| | |||||| |||| || ||| || ||||||| Sbjct 2006 GCTTCGGTGAATCACTTGAGCCCTGATACATTTTCGGTGCCATGGAG---CTAGACCAGT 2062 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||||| |||| ||||||||||||||||||||| |||||||||||||| || Sbjct 2063 GAGCTATTACGCTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGGTTGTCATCG 2122 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 2123 CTCGATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 2182 Query 389 GTTTCCCTCTCG 400 |||||||||||| Sbjct 2183 GTTTCCCTCTCG 2194 >seq199128 Length=1859 Score = 141 bits (156), Expect = 2e-31 Identities = 146/190 (77%), Gaps = 6/190 (3%) Strand=Plus/Minus Query 212 GCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGT 268 ||||||| | || |||| ||||| |||||| |||| | ||| || |||| || Sbjct 256 GCTTCGGTGAATCACTTGAGCCCTAATACATTTTCGGTTCCATGGAG---CTAGACCTGT 200 Query 269 GAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACG 328 |||||||||| | |||| ||||||||||||||||||||| |||||||| ||||| || Sbjct 199 GAGCTATTACACTTTCTTCAAAGGATGGCTGCTTCCAAGCCCACCTCCTGTTTGTCATCG 140 Query 329 CAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCT 388 | ||| |||||| ||||| ||| | ||||||| ||||||| | |||||||||| Sbjct 139 CTCAATCACTTCCTTTTCCACTAAGTGATTGCTTAGGGACCTTAGCGTACGATCTGGGCT 80 Query 389 GTTTCCCTCT 398 |||||||||| Sbjct 79 GTTTCCCTCT 70 >seq197945 Length=1534 Score = 111 bits (122), Expect = 4e-22 Identities = 102/128 (80%), Gaps = 6/128 (5%) Strand=Plus/Plus Query 270 AGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGC 329 ||||||||||||||||||||||| ||| || | || |||||||||| ||||| || Sbjct 794 AGCTATTACGCACTCTTTCAAGGGTGG-----TCTAGGCAAACCTCCTGGCTGTCTCTGC 848 Query 330 AACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCCTTAGCTGATGATCTGGGCTG 389 | | | || |||||| ||||||| || |||||||||||||||| ||||| |||||| Sbjct 849 ACCCCTACCTCCTTTATCACTGAGCGGTCA-TTAGGGGCCTTAGCTGGTGATCCGGGCTG 907 Query 390 TTTCCCTC 397 ||||| || Sbjct 908 TTTCCTTC 915 >seq197829 Length=991 Score = 98.7 bits (108), Expect = 2e-18 Identities = 95/119 (80%), Gaps = 5/119 (4%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| |||||| | ||| ||||||| | | || || || Sbjct 738 CCACAGCTTCGGCAGATCGCTTA-GCCCCGTT-CATCTTCGGCGCAAGAGCGCTCGATCA 681 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCT 325 ||||||||||||||||||| |||| | |||||||| | || |||||||||| ||||| Sbjct 680 GTGAGCTATTACGCACTCT---AAGGGTAGCTGCTTCTAGGCAAACCTCCTGGCTGTCT 625 >seq200111 Length=12942 Score = 93.3 bits (102), Expect = 1e-16 Identities = 139/193 (72%), Gaps = 12/193 (6%) Strand=Plus/Minus Query 214 TTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGC---GGAATCACTTGACCAGTGA 270 ||| | | || |||| ||||| | |||||| || | || ||| || ||||| ||| Sbjct 2700 TTCAGTGAATCACTTGAGCCCTGATACATTTTCAGTGCCATGGAG---CTAGACCAATGA 2644 Query 271 GCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTGGTTGTCTACGCA 330 || ||||||| |||| |||||||||||||||||||| ||||||| ||||| || Sbjct 2643 GCAATTACGCTTTCTTCACAGGATGGCTGCTTCCAAGCCCACCTCCTCTTTGTCATTGCT 2584 Query 331 ACTCCACATCC-TTTCCCACTGAGTCA----CCACTTAGGGGCCTTAGCTGATGATCTGG 385 ||| ||| ||| |||| ||| | | |||||| |||||| || | ||||| Sbjct 2583 CGATCACTTCCTTTTTTCACTAAGTGATTGCTTAATTAGGGATCTTAGC-GACGTTCTGG 2525 Query 386 GCTGTTTCCCTCT 398 ||||||||||||| Sbjct 2524 GCTGTTTCCCTCT 2512 >seq197947 Length=1535 Score = 93.3 bits (102), Expect = 1e-16 Identities = 75/91 (82%), Gaps = 0/91 (0%) Strand=Plus/Plus Query 310 AACCTCCTGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAGTCACCACTTAGGGGCC 369 |||||||||| ||||| ||| | | || |||||| ||||||| || ||||||||| Sbjct 1381 AACCTCCTGGCTGTCTCTGCACCCCTACCTCCTTTATCACTGAGCGGTCATTTAGGGGCC 1440 Query 370 TTAGCTGATGATCTGGGCTGTTTCCCTCTCG 400 ||||||| ||||| ||||||||||||||||| Sbjct 1441 TTAGCTGGTGATCCGGGCTGTTTCCCTCTCG 1471 >seq198179 Length=3206 Score = 77.0 bits (84), Expect = 8e-12 Identities = 86/112 (77%), Gaps = 5/112 (4%) Strand=Plus/Minus Query 207 CCACAGCTTCGGCGGATAACTTAAGCCCCGCTACATTATCGGCGCGGAATCACTTGACCA 266 ||||||||||||| ||| |||| | |||| | ||| |||||| | ||||| | || Sbjct 381 CCACAGCTTCGGCAGATCGCTTA-GTCCCGTT-CATCTTCGGCGTAACAACACTTAATCA 324 Query 267 GTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCCTG 318 ||||||||| |||||||||||| | |||||| || | || ||||||||| Sbjct 323 GTGAGCTATCACGCACTCTTTCTGG---GGCTGCGTCTAGGCAAACCTCCTG 275 >seq198518 Length=7091 Score = 75.2 bits (82), Expect = 3e-11 Identities = 107/150 (71%), Gaps = 7/150 (5%) Strand=Plus/Plus Query 257 CACTTGACCAGTGAGCTATTACGCACTCTTTCAAGGATGGCTGCTTCCAAGCCAACCTCC 316 ||||||| ||||||||||||| ||||||||| |||| | | |||||| | || ||| || Sbjct 2084 CACTTGATCAGTGAGCTATTAGGCACTCTTTGAAGGGTTGATGCTTCTAGGCAAACTGCC 2143 Query 317 TGGTTGTCTACGCAACTCCACATCCTTTCCCACTGAG---TCA----CCACTTAGGGGCC 369 | | ||| ||| ||| ||||| ||||||| ||| || ||||||||| Sbjct 2144 TCACTATCTCTGCACCTCTGACTCCTTCATCACTGAGTGCTCAATGCTCATTTAGGGGCC 2203 Query 370 TTAGCTGATGATCTGGGCTGTTTCCCTCTC 399 |||||| | || |||| || |||||| Sbjct 2204 TTAGCTTGTTATGCAGGCTATTAACCTCTC 2233 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1175242409472