Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01001821.1 Length=161 Score E Sequences producing significant alignments: (Bits) Value seq198301 111 1e-22 seq197627 86.0 5e-15 seq197828 80.6 2e-13 >seq198301 Length=4382 Score = 111 bits (122), Expect = 1e-22 Identities = 118/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 6 TTGCAGACTACAATCCGGACTACGATACACTTTCTGGGATTAGCTCCCCCTCGCGGGTTG 65 |||||| || ||||||| ||| | ||| ||| |||||| |||||||||| | Sbjct 4064 TTGCAGCCTGCAATCCGAACTGAGGACGGGTTTTTGGAGTTAGCTAACCCTCGCGGGATC 4005 Query 66 GCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTACCCATAAGGGCCATGAGG 125 || |||| ||| ||||||||| ||||||| |||| |||||||| ||||| | Sbjct 4004 GCAACCCTTTGTCCCGACCATTGTAGCACGTGTGTCGCCCAGGGCATAAGGGGCATGATG 3945 Query 126 ACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||||||||| ||||||||||||| || |||| Sbjct 3944 ACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 3909 >seq197627 Length=219 Score = 86.0 bits (94), Expect = 5e-15 Identities = 89/117 (76%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 45 TTAGCTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCC 104 |||||| |||||||||| | || |||| ||| |||||||| |||||| ||| Sbjct 126 TTAGCTAACCCTCGCGGGATCACGACCCTTTGTCCCGGCCATTGTAGCACGTGTATCGCC 67 Query 105 CTACCCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 | |||||||| ||||| || ||||| |||||| ||||||||||||| || |||| Sbjct 66 CAGGGCATAAGGGGCATGATGATTTGACATCATCCTCACCTTCCTCCGGCTTATCAC 10 >seq197828 Length=979 Score = 80.6 bits (88), Expect = 2e-13 Identities = 87/113 (77%), Gaps = 3/113 (3%) Strand=Plus/Plus Query 49 CTCCCCCTCGCGGGTTGGCGGCCCTCTGTATGTACCATTGTATGACGTGTGAAGCCCTAC 108 ||| ||||||| || | | |||| ||| ||||||||| ||||||| |||| Sbjct 754 CTCGCCCTCGCAGGGTCTCTACCCTTTGTCCCGACCATTGTAGCACGTGTG--GCCCAGG 811 Query 109 CCATAAGGGCCATGAGGACTTGACGTCATCCCCACCTTCCTCCGGTTTGTCAC 161 |||||||| |||| | |||||||||||||| ||||||||||||| || |||| Sbjct 812 GCATAAGGGGCATGTG-ACTTGACGTCATCCTCACCTTCCTCCGGCTTATCAC 863 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415193181910