Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Vaccinium_20macrocarpon_20[genbank_20GCA_5F000775335.1_202014-09-04] 200,203 sequences; 414,621,889 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq197861 114 3e-23 seq177630 113 1e-22 seq184018 107 5e-21 seq132674 100 7e-19 seq194986 96.9 8e-18 seq198186 89.7 1e-15 seq189747 89.7 1e-15 seq145216 86.0 2e-14 seq113069 78.8 2e-12 seq150839 73.4 1e-10 >seq197861 Length=1138 Score = 114 bits (126), Expect = 3e-23 Identities = 105/133 (79%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 |||||||| | | || || |||| ||| | |||||||| ||||||||| || ||| | Sbjct 984 GGCCTTCTACCTCCATGCAGCATTGCTTCGTCAGGCTTTCGCCCATTGCAGAAAATTTCG 925 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 ||| |||||||| |||||||||||| ||||||||| | ||||||||| | ||||| | Sbjct 924 TACTACTGCCTCCTGTAGGAGTCTGGGTCGTGTCTCAATCCCAGTGTGGTTAATCATCAT 865 Query 138 CTCAGACCAGCTA 150 ||| |||||||| Sbjct 864 CTCGAACCAGCTA 852 >seq177630 Length=5178 Score = 113 bits (124), Expect = 1e-22 Identities = 104/132 (79%), Gaps = 5/132 (4%) Strand=Plus/Plus Query 18 GGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCC 77 ||| |||| | | |||| ||||| ||| |||||||||| |||| ||| | | |||||| Sbjct 4665 GGCTTTCTACTTCCACGTGGCATTGCTCCATCAGGCTTTTGCCCTTTGCGGGAAATTCCC 4724 Query 78 CACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGCTGGTCATCCT 137 | |||||||||||| ||||||||||| | | |||||||| ||| || | ||||||| Sbjct 4725 CCCTGCTGCCTCCCATAGGAGTCTGGGCAGCGTCTCAGTCCCAATG-----GATCATCCT 4779 Query 138 CTCAGACCAGCT 149 ||| |||||||| Sbjct 4780 CTCCGACCAGCT 4791 >seq184018 Length=6353 Score = 107 bits (118), Expect = 5e-21 Identities = 99/123 (80%), Gaps = 2/123 (2%) Strand=Plus/Minus Query 4 CTTTACAACCCGAAG-GCC-TTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCC 61 |||||||| | | | ||| ||||||| |||||| || |||| ||||||||| ||||| Sbjct 123 CTTTACAAGCAGCATCGCCATTCTTCAGTCACGCGATATTGCTGGATCAGGCTTTCGCCC 64 Query 62 ATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAG 121 ||||| ||| |||| ||||||||| ||||| |||||| | |||||||||||| |||| Sbjct 63 ATTGTCCAAGATTCATCACTGCTGCTCCCCGTGGGAGTCCAGGCCGTGTCTCAGTCCCAG 4 Query 122 TGT 124 ||| Sbjct 3 TGT 1 >seq132674 Length=1927 Score = 100 bits (110), Expect = 7e-19 Identities = 88/110 (80%), Gaps = 0/110 (0%) Strand=Plus/Minus Query 14 CGAAGGCCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATAT 73 ||| ||| |||| ||| ||||| |||| ||| ||||| |||| |||| ||| | || || Sbjct 869 CGATGGCTTTCTACATCCACGCAGCATTGCTCCATCACGCTTTCGCCATTTGCGAAAAAT 810 Query 74 TCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTG 123 ||||||| | ||||| ||| |||||||| |||||||||||||||||| Sbjct 809 TCCCCACCGTTGCCTATTGTAAGAGTCTGGGTCGTGTCTCAGTTCCAGTG 760 >seq194986 Length=11426 Score = 96.9 bits (106), Expect = 8e-18 Identities = 84/102 (82%), Gaps = 2/102 (2%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATT-GTGCAATATTCCCC 78 ||||| ||| |||||| || |||| ||| ||||| | |||||| || ||| ||||||| Sbjct 101 CCTTCCTCACTCACGCGATATTGCTGGATCGGGCTTCCCCCCATTTGTCCAAGATTCCCC 160 Query 79 ACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCA 120 ||| ||||| ||||| ||||||||||| |||||||||| ||| Sbjct 161 ACT-CTGCCCCCCGTGGGAGTCTGGACTGTGTCTCAGTCCCA 201 >seq198186 Length=3246 Score = 89.7 bits (98), Expect = 1e-15 Identities = 111/153 (73%), Gaps = 17/153 (11%) Strand=Plus/Plus Query 262 GTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCAGGCAGTTTCCCAGACATTACT 321 |||||||| |||||||||| ||| | ||||||| ||||| ||| | | ||||| Sbjct 3108 GTATTAGCAGCCGTTTCCAGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACT 3167 Query 322 CACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTTACCGTTCGACTTGCA 381 ||||||||||||||| ||| || || |||| |||| ||||||||| Sbjct 3168 CACCCGTCCGCCACT------GGAAACACCA-----CTTC------CCGTCCGACTTGCA 3210 Query 382 TGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 ||||| | || ||||||||||||||| ||||| Sbjct 3211 TGTGTCAAGCATGCCGCCAGCGTTCATCCTGAG 3243 >seq189747 Length=8024 Score = 89.7 bits (98), Expect = 1e-15 Identities = 106/142 (75%), Gaps = 5/142 (4%) Strand=Plus/Minus Query 58 GCCCATTGTGCAATATTCCCCACTGCTGCCTC----CCGTAGGAGTCTGGACCGTGTCTC 113 ||||||||| ||| |||| ||||||||||| | | || |||||| || | ||| ||| Sbjct 3489 GCCCATTGTCCAAGATTCTCCACTGCTGCCCCGCGTCTGTTGGAGTCCGGGCTGTGACTC 3430 Query 114 AGTTCC-AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCC 172 ||| || |||||||||| |||||| |||||||||| | ||| | || || ||| Sbjct 3429 AGTCCCAAGTGTGGCTGATCATCCGAAAAGACCAGCTAAGCATCACAGTCTTGGCCAGCC 3370 Query 173 ATTACCCCGCCAACTAGCTAAT 194 ||||| ||||||| ||||| Sbjct 3369 TTTACCTGACCAACTAACTAAT 3348 >seq145216 Length=2450 Score = 86.0 bits (94), Expect = 2e-14 Identities = 65/77 (84%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 60 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119 ||||||| ||| |||||||||||||||| ||| | ||||| ||| |||||||||||||| Sbjct 2389 CCATTGTCCAAGATTCCCCACTGCTGCCCCCCATGGGAGTTTGGGTCGTGTCTCAGTTCC 2330 Query 120 AGTGTGGCTGGTCATCC 136 || || |||| ||| || Sbjct 2329 AGAGTAGCTGATCAACC 2313 >seq113069 Length=1329 Score = 78.8 bits (86), Expect = 2e-12 Identities = 58/68 (85%), Gaps = 0/68 (0%) Strand=Plus/Plus Query 20 CCTTCTTCATACACGCGGCATGGCTGCATCAGGCTTGCGCCCATTGTGCAATATTCCCCA 79 ||||||||| |||||| || |||| ||||| ||| |||||||||| ||| |||||||| Sbjct 511 CCTTCTTCACTCACGCGATATTGCTGGATCAGCCTTTCGCCCATTGTCCAAAATTCCCCA 570 Query 80 CTGCTGCC 87 |||||||| Sbjct 571 CTGCTGCC 578 >seq150839 Length=2746 Score = 73.4 bits (80), Expect = 1e-10 Identities = 134/195 (69%), Gaps = 15/195 (8%) Strand=Plus/Minus Query 5 TTTACAACCCGAAGGCCTTCT----TCA-TACACGCGGCATGGCTGCATCAGGCTTGCGC 59 || ||||||| |||||||| ||| | ||||| || | ||| ||||||| | Sbjct 468 TTCACAACCCCTGGGCCTTCTACCTTCACTTCACGCAGCTTCTCTG--TCAGGCTATTGT 411 Query 60 CCATTGTGCAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCC 119 |||||| | || || ||||||| || |||| |||| | ||| | |||| || || || Sbjct 410 CCATTGAGGAAAATCCCCCACTACTACCTCATGTAGCATTCTAGGTCGTGCCTTGGTCCC 351 Query 120 AGTGTGGCTGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCC 179 ||| ||||| |||||||||| || |||| | |||| || || ||| || Sbjct 350 AGTATGGCTAATCATCCTCTCGAAC--------GATCATAGCCTTAGTAAGCTATTGCCT 299 Query 180 CGCCAACTAGCTAAT 194 | | ||||||||||| Sbjct 298 CACAAACTAGCTAAT 284 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1219952718528